Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00208 ATGTCGATCGCTTTCTCCTTCTTCGCTCCTCCCTCTTCCCTTTCCAACGCCAAATCCATTCCCTCCTTTTCACTCTCTTCCCCTCCCATCCGCCTCCCCCTCCGCCGCCCCTCCGATCGCTTTCTCCCTCTCCGCTCCTCcggcggaggctctggcggcggatccttcggaggtcacggcggcggcggcgATGCTCATGGAGACGGCGGCCATGAAAGAGAGAACGAGGCCTTGATGGTGGTGGCCGAGGCCGGTAGGTCGCTGGAGAGCGTTCCGGCGGACTTGGCGGCGGCGATAAAGGCGGGGAAGATTCCGGCGTCGGTGGTGACGCGGTTTCTGGAGCTGGAGAAGTCGGCGTTCTTCCGGTGGCTGCTTCAGTTCTCCGGCTTCAGAGAGCGTCTCCTCGCGGATGATCTCTTCCTCGCTAAGGTCGCCATGGAATGCGGCGTTGGCGTCTTCACCAAGACTGCTGCTGAGTATGACCGAAGAAGAGAAAACTTTTTCAAGGAGATTGAAATTGTCTTCGCTGATGTGGTGATGGCCATAATTGCAGATTTCATGCTGGTTTATCTTCCTGCGCCTACTGTGGCTCTTAGACCACCCCTGGGACTCAATGCAGGGCCTATTGCTAAGTTTTTCCATGGCTGCCCAGATAATGCATTCCAGGTAGCTCTCTCTGGAGCATCGTATTCCTTGTTGCAAAGGTTTGGTGCAATTGCGCGTAATGGGGCTAAGCTTTTTGCAGTTGGAACTGCTTCATCACTGGTTGGAACAGCTATGACGAATGCCTTAATTAATGCAAAGAAGGCAGTTGATAAGTCTTCTGAAGGGGAAATTGAAAATGTTCCCATATTGTCTACCAGTGCTGCCTATGGTGTCTATATGGCAGTTTCCAGCAATCTCAGGTATCAAGTACTTGCTGGAATCATTGAACAGAGGCTTTTGGAACCTTTGCTGCACCAGCACAAGCTCATGCTTAGTGCACTTTGTTTTGCTGTGCGGACTGGCAATACGTATTTGGGCTCATTATTGTGGGTGGATTATGCTCGATGGATAGGAGTCCAATAG 1068 0.4934 MSIAFSFFAPPSSLSNAKSIPSFSLSSPPIRLPLRRPSDRFLPLRSSGGGSGGGSFGGHGGGGDAHGDGGHERENEALMVVAEAGRSLESVPADLAAAIKAGKIPASVVTRFLELEKSAFFRWLLQFSGFRERLLADDLFLAKVAMECGVGVFTKTAAEYDRRRENFFKEIEIVFADVVMAIIADFMLVYLPAPTVALRPPLGLNAGPIAKFFHGCPDNAFQVALSGASYSLLQRFGAIARNGAKLFAVGTASSLVGTAMTNALINAKKAVDKSSEGEIENVPILSTSAAYGVYMAVSSNLRYQVLAGIIEQRLLEPLLHQHKLMLSALCFAVRTGNTYLGSLLWVDYARWIGVQ 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00208 355 PANTHER PROTEIN RETICULATA-RELATED 2, CHLOROPLASTIC-RELATED 47 355 - -
Cca04g00208 355 PANTHER PROTEIN RETICULATA-RELATED 4, CHLOROPLASTIC 47 355 - -
Cca04g00208 355 Pfam Protein RETICULATA-related 132 309 IPR021825 -
Cca04g00208 355 MobiDBLite consensus disorder prediction 52 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00208 Cca-Chr4 1953200 1957266 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00208 - - gmx:100796187 534.258