Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00207 ATGGCTTTAGTTGTACCTCTACACCACACTCTCCCTTCTCTTCCTCTCCTTGGAAGATCACCCATATCCACACCCACAAGTCTCTTATCTCACAAAACCAAACCTAATTCAGCAACCATCAAGTGCTCTTGCACCTCAAGTGAATTATCCGAATCAGAGCCTCCCTTGAGGCAAGTGTGGAAGCAAATCCAAGGCAGCAACGATTGGGAGAATATGATAGAGCCGACGATGAACCCTCACCTGAGGAACGAAATAATCCGGTACGGAGAACTAGCCCAAGCATGCTACGACTCCTTCGACTTCGACCCTCACTCAAAGTATTGCGGAACGTGCAAGTACCAGCCCTCGCAATTCTTCGACAACCTCAACATGTCCCACATGGGCTACACCATAAGCCGGTACCTCTACGCGACCTCCAACGTCAACCTCCCGAACTTCTTCCAGAAGTCCAGCCTCGGCACCGTGTGGAGCCCACACGCCAACTGGATGGGCTACGTGGCAGTAACCACCGACAAGGAACAGATCCAACGCCTCGGACGCCGCGACATCGTCATCGCCTGGAGAGGCACGGTCACCTACGTCGAGTGGATCTACGACCTCAAAGACATTCTCCGACCACCACTCTTCTCCAACGACCCCACCATCAAAGTGGAATCCGGTTTCTACGATTTGTACACCAAGAAAGAACACTCCTGCACCTATTGCTCCTTCTCCGCTCGCGAGCAACTCCTCTCCGAAGTCAACCGCCTTCTTCACTACTACCGAGACGAACACATCTCCATCACCATCACAGGCCACAGTCTCGGTGCTGCGTTGGCCATTCTCAGCGCCTACGACATAGCCGAGCTCAACCTAAACGTTCTTCAGGAGACCAAGAGTATTATTCCGCTCACGGTCTTCTCCTTCGCGGGTCCCAGAGTGGGGAACCTCAAGTTCAAGGAGCGGTGCGAGGAGCTTGGGGTGAAGGTGCTGAGGGTGGTGAACGTGCATGACGTGGTGCCCACGCTGCCTGGGATAATAACCAACGAGAAGTTTCAGTTTCAGAGGTACGTAGAGGAGGCGCTGCGTTTCCCGTGGAGCTACGCGCACGTGGGAACGGAGATGGCGTTGGATAACAGGGAGAGCCCGTTTCTGAAGGGGAGCAATGATCTGGTGTGCGCGCATAACTTGGAGGTGCACCTGCACTTGGTGGACGGGTACCATGGGAAGGGGAAGAGGTTCTACTTGGCGTCCAAACGGGACATAGCGCTTGTCAACAAGAGCTGTGACTTTCTGAGGAGTGAGTACGGTGTTCCGCCGCACTGGCGCCAGGACGAGAATAAGGGGATGGTCAGGGGCCGAGATGGGCGGTGGGTTCTGCCGGAGCGCCCCCGCTTGGAGGCTCATCCGCCGGACATGCTTCACCATCTTCACCAAGTGCTCAACAACCACCTCCTAGGTCACCCATTAGAAACCACTTAA 1461 0.5483 MALVVPLHHTLPSLPLLGRSPISTPTSLLSHKTKPNSATIKCSCTSSELSESEPPLRQVWKQIQGSNDWENMIEPTMNPHLRNEIIRYGELAQACYDSFDFDPHSKYCGTCKYQPSQFFDNLNMSHMGYTISRYLYATSNVNLPNFFQKSSLGTVWSPHANWMGYVAVTTDKEQIQRLGRRDIVIAWRGTVTYVEWIYDLKDILRPPLFSNDPTIKVESGFYDLYTKKEHSCTYCSFSAREQLLSEVNRLLHYYRDEHISITITGHSLGAALAILSAYDIAELNLNVLQETKSIIPLTVFSFAGPRVGNLKFKERCEELGVKVLRVVNVHDVVPTLPGIITNEKFQFQRYVEEALRFPWSYAHVGTEMALDNRESPFLKGSNDLVCAHNLEVHLHLVDGYHGKGKRFYLASKRDIALVNKSCDFLRSEYGVPPHWRQDENKGMVRGRDGRWVLPERPRLEAHPPDMLHHLHQVLNNHLLGHPLETT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00207 486 Pfam Lipase (class 3) 184 339 IPR002921 GO:0006629
Cca04g00207 486 Gene3D alpha/beta hydrolase 59 465 IPR029058 -
Cca04g00207 486 CDD Lipase_3 134 371 - -
Cca04g00207 486 SUPERFAMILY alpha/beta-Hydrolases 84 401 IPR029058 -
Cca04g00207 486 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 31 475 - -
Cca04g00207 486 PANTHER PHOSPHOLIPASE A1-IGAMMA3, CHLOROPLASTIC 31 475 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00207 Cca-Chr4 1945985 1947697 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00207 56 474 Acyl Lipid Metabolism Gene Families AT1G51440 71.562 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00207 - - gmx:100795661 773.852