Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00201 ATGACGACGCCGTTTCGACCACCCACCACCTCAGCGCCGCCCAAGCTTCAGATCCCCACCTTCCACGGCTTGAGCTCTGCATCCGCCTCTTCCTCTTCCATCTCTCGCAATGCCCTCACGCTTCCGCCATCCACTCGCTCTCTCTCCCTCTCCCTCATACGCGCCGTTTCCACGCCTGCGAAGGCTGAAACTGCCACTGAGAAGCGCAGCAAAGTCGAAATATTCAAAGAGCAAAGCAATTTCATAAGGTATCCTCTGAATGAGGACATGTTGACGGATGCGCCTAACATAAGTGAAGCTGCCACTCAGTTGATTAAGTTTCACGGTAGCTACCAGCAGTACAATAGAGAAGATCGTGGTTCCAGAAACTACTCCTTCATGATACGGACCAAGAACCCTTGTGGCAAGGTTTCAAACCAGCTTTACCTCACCATGGATGACCTTGCTGACCAGTTTGGGATTGGGACGCTTCGCTTGACCACCAGACAGACGTTTCAGCTCCATGGTGTTCTCAAGAAGGACCTTAAGACTGTCATGGCTACTATTATTAGAAACATGGGCTCAACTCTTGGTGCTTGTGGTGACCTCAACAGGAATGTGCTTGCTCCTGCTGCTCCCCTTGTGAGGAAAGATTACCTCTTTGCTCAACAGACTGCGGAGAACATTGCGGCGCTGCTCACTCCGCAGTCTGGTTTCTACTACGATATTTGGGTAGATGGGGAGAAGTTTTTGACATCAGAACCACCTGAAGTGGTTCGCGCACGAAATGACAATTCTCATGGGACAAACTTCCCGGATTCCCCCGAGCCCATCTATGGAACTCAGTTCTTGCCAAGGAAATTCAAGATTGCTGTCACTGTGCCAACTGATAACTCGGTGGATATTCTCACAAAtgatattggtgttgttgttgttactgatgatgatgGGGAGCCTAAAGGGTTCAACATATATGTTGGTGGTGGGATGGGAAGAACTCATAGGTTGGAAACCACTTTTCCTCGCTTGGCTGAACCCTTAGGTTATGTACCAAAGGAGGATATTCTATATGCAGTGAAAGCAATTGTTGTTACACAACGAGAAAATGGGAGAAGAGATGACCGCAAGTATAGTAGATTGAAATATTTGATCAGCTCTTGGGGAATTGAAAAGTTTAGAAGTGTGGTTGAGCAATATTATGGCAAGAAATTTGAACCTTTCCGTGAGTTGCCAGAATGGGAATTCAAAAGTTATCTTGGGTGGCATGAGCAGGGTGATGGCAAATTGTTTTATGGGCTTCATGTTGATAATGGTCGTATTGGTGGAAATATGAAAAAGACATTGAGGGAGGTCATTGAGAAGTATAATTTGAATGTAAGAATCACACCTAATCAGAATATTATCTTGACTGATGTTCGTGCTGCATGGAAGCGTCCCATTACTACCACTCTTGCTCAGGCTGGTCTGCTGCAACCTAGATTTGTAGATCCCCTCAACATAACTGCTATGGCATGCCCTGCTTTCCCATTATGTCCACTGGCAATTACTGAAGCTGAACGGGGGATACCTAACATTCTTAAGCGGATTCGTGCTGTTTTTGATAAGGTTGGTCTGAAGTATAATGAGTCGGTAGTTGTAAGGATAACTGGCTGCCCTAATGGTTGTGCTAGACCATACATGGCAGAACTTGGACTAGTTGGTGATGGCCCAAATAGCTATCAGCTTTGGCTTGGAGGAAACAAGAAACAAACATCATTAGCTCGAACTTTCATGGACAAGGTGAAGCTTCATGACCTTGAAAAAGTTTTGGAGCCTTTGTTTTATTATTGGAAGCAACGGCGTCAATCTAAAGAATCATTTGGCGACTTCACAAATAGAATGGGATTTGAGAAGCTTAAAGAACTTGTTGAGAAATGGGAGGGTCCAGTGGTAGCACCAGCACGCCACAACCTCAAACTTTTTGCTGACAAGGAGACATACGAAGCAATGGATGAATTAGCAAAGCTTCAAAACAAGAGTGCTCATCAGTTGGCCATGGAAGTTATCCGCAGCTATGTTGCTTCCAACCAAAATGGAAAAGGTGAATGA 2067 0.449 MTTPFRPPTTSAPPKLQIPTFHGLSSASASSSSISRNALTLPPSTRSLSLSLIRAVSTPAKAETATEKRSKVEIFKEQSNFIRYPLNEDMLTDAPNISEAATQLIKFHGSYQQYNREDRGSRNYSFMIRTKNPCGKVSNQLYLTMDDLADQFGIGTLRLTTRQTFQLHGVLKKDLKTVMATIIRNMGSTLGACGDLNRNVLAPAAPLVRKDYLFAQQTAENIAALLTPQSGFYYDIWVDGEKFLTSEPPEVVRARNDNSHGTNFPDSPEPIYGTQFLPRKFKIAVTVPTDNSVDILTNDIGVVVVTDDDGEPKGFNIYVGGGMGRTHRLETTFPRLAEPLGYVPKEDILYAVKAIVVTQRENGRRDDRKYSRLKYLISSWGIEKFRSVVEQYYGKKFEPFRELPEWEFKSYLGWHEQGDGKLFYGLHVDNGRIGGNMKKTLREVIEKYNLNVRITPNQNIILTDVRAAWKRPITTTLAQAGLLQPRFVDPLNITAMACPAFPLCPLAITEAERGIPNILKRIRAVFDKVGLKYNESVVVRITGCPNGCARPYMAELGLVGDGPNSYQLWLGGNKKQTSLARTFMDKVKLHDLEKVLEPLFYYWKQRRQSKESFGDFTNRMGFEKLKELVEKWEGPVVAPARHNLKLFADKETYEAMDELAKLQNKSAHQLAMEVIRSYVASNQNGKGE 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00201 688 Gene3D Sulfite Reductase Hemoprotein, domain 1 489 636 IPR045854 -
Cca04g00201 688 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 491 642 IPR045854 -
Cca04g00201 688 PRINTS Sirohaem Fe-binding site signature 493 511 IPR006066 GO:0016491|GO:0020037|GO:0051536
Cca04g00201 688 PRINTS Sirohaem Fe-binding site signature 542 560 IPR006066 GO:0016491|GO:0020037|GO:0051536
Cca04g00201 688 SUPERFAMILY Nitrite and sulphite reductase 4Fe-4S domain-like 194 409 IPR045854 -
Cca04g00201 688 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 66 193 IPR036136 GO:0016491
Cca04g00201 688 PANTHER BNAA01G31570D PROTEIN 34 634 - -
Cca04g00201 688 MobiDBLite consensus disorder prediction 21 36 - -
Cca04g00201 688 Gene3D Sulfite Reductase Hemoprotein;Domain 2 401 485 - -
Cca04g00201 688 PANTHER SULFITE REDUCTASE [NADPH] SUBUNIT BETA-RELATED 34 634 IPR045169 GO:0016491|GO:0020037|GO:0051536
Cca04g00201 688 TIGRFAM sir: sulfite reductase, ferredoxin dependent 60 632 IPR011787 GO:0020037|GO:0050311|GO:0051539
Cca04g00201 688 ProSitePatterns Nitrite and sulfite reductases iron-sulfur/siroheme-binding site. 542 558 IPR006066 GO:0016491|GO:0020037|GO:0051536
Cca04g00201 688 SUPERFAMILY Nitrite/Sulfite reductase N-terminal domain-like 412 484 IPR036136 GO:0016491
Cca04g00201 688 MobiDBLite consensus disorder prediction 1 36 - -
Cca04g00201 688 Gene3D Sulfite Reductase Hemoprotein, domain 1 193 400 IPR045854 -
Cca04g00201 688 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 415 468 IPR005117 GO:0016491
Cca04g00201 688 Pfam Nitrite/Sulfite reductase ferredoxin-like half domain 124 182 IPR005117 GO:0016491
Cca04g00201 688 Pfam Nitrite and sulphite reductase 4Fe-4S domain 492 631 IPR006067 GO:0016491|GO:0020037|GO:0051536
Cca04g00201 688 Pfam Nitrite and sulphite reductase 4Fe-4S domain 219 397 IPR006067 GO:0016491|GO:0020037|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00201 K00392 - gmx:547693 1261.51