Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00197 ATGGATTGCGGCGTTGGATCCATCGTGTGGGTGCGCCGGCGGAACGGCTCCTGGTGGCCCGGCCAAATTCTCGGCCCCGACGACCTCTCCGCCTCTCACCTCACCTCGCCCCGATCCGGAACCCCCGTCAAACTCCTCGGCAGAGAGGACGCCAGTGTGGATTGGTACAATTTGGAGAAATCTAAGCGCGTTAAGGCATTCCGATGCGGCGAGTTTGATGATTGCATCGAAAAGGCTGAGTCCTCTCAGGGAGGACCGTTGAAGAAACGAGAGAAGTATGCGAGGCGAGAAGACGCCATTCTTCACGCTCTTGAGCTCGAGAAACAGATTTTGAAGAAGCAAGGGAAACCAGGTGCTAGATCGTTGAATACTGTTAGAAAAGGCGCAGTTACGTCGTCGTCACCGGAGACGCTGGGGAATGATTATGAAAAGTGTGCAAATTCAAATTCGTATATTTACTGTGAGAATGAGGCTGCTGGAAGTCACTTTCATTCTGAGGTGGCCAGGGATGTGAATCACCTGCGTGGGGAAGTGGATTACTGTGAAACAACTCCTCGGATGAGAGACTTGCAGGATTTTGGGCTCAGAATTGCCCCCGCCAAGAGGAAGTATTCGACTTCTCTTGATCCGAAATTTGGCGTTGACGATGGAGCTCGGGGTCTTTCAAGTGGTGGTGTTCACATGAATGGAGCTGGTCACGTAGGATCTTCCCGAGCTAAGAGGAGCAGATGTGTGTATTTTCAGCCTGAGTCTAGTGATTCTCTTGATTATAGAGAGACTCTACCCCGTGCGGAGATGTCGTCTTCCCAACGCAGAAAGGAGTTTCCTTATCATGGTTCTTTGGTTGGAGAGACTGAATATACTTTTATGGATGATGTTGAATCTGATTCTTCAGAAACAGCTTCTACTGATTCTGATTCCGATTCTTCTGAGACAGAACCAGACTTAGATGAGGATATGACTATATTTTCAGAAACTGGTCATGATGCTGAAGAACACGAAAACACTAGCAGTGAGGAGCTTGATGAATTAGCAATTTCCAGTGACATGCCTCACCTCTATCCTCGTGACGTAATAACAAATAATGAAGCTGTGTCTAAATGGCAACTGAAAGGCAAAAGAAACAATCGGAATCTTGTAAAGAGGTCTGTTGGTGCTTCTGATGGAAAATGTATTGTGTATGGAACAGAAGCAGATGCTGAAGGAAGGAGTAGTCATTTAAGGCACAATAAAATGGGTCCAAGTTTGCACCGCTACAAATTTGATTTTGGTGATACTTTTGACGATGATGATCAAACTTTTGGACCGGAAGATGAATACTCTCTAACTCCTAAATCTATATCAAAAGGTCAAAGTAAATTTCATCGTGGTGTAGCTTGGAATGATTGGGCCTGGGATGATCATCTTGTTTCCAAAGGATATGGAGATGCTAAAGCATATTCTCCAATGTATGGTGATCGTTATCATTTTGGTGGGAGGGTGAGGCCTATGCTGGTTAATGTAGATTTGAAGGTTCAGGCAAGCTATCGGAAAGAGCATGTACCCTTCATTTCTCTCATGAGTAAATTAGATGGGAGGGCAATAGTAGGGCACCCAATCCAGGTTGAAGCTCTCAAGGATGGTTCATCTGATATTCTATTTCCTGCAATTGATGATTTCAATAATGATGGGACTGGTTTTGAGGGAAGTAGTGTGCTTCCACCAGCTTGGAGGACTGCAAGGAGAACTGCAAATTTTCGCGTCCCACGTCCCCATGTGCTATCATCAAATGGTGCTGAAGTTGCTGGAGAGTTTCCCTCTTCAGATCAAGAACAAAGCTTTGACTATAAAAGTTTAAACACCGGAAATTGCAGTCACCAGGCTAGTCTTCGAAAGAAGAGTGGCCTTAAAAGTCATCGGTCTTTAGCTGACAAAAAGTCATTAAAAAAGGTGCCAAAGAAATTGAGCTTGTCATCTAGCCAAAAAACTAGAACTCTGTCCTCATTATCTACTGAACATAGTCTTAGTAGAAAGCCATTACATGATAGCAGTAGTTATCAAACAGATAGATTGATTAAACCAGAAATCTCTGGGCCCCCTACAGTAGCTTGCATACCAGTCCAGTTAGTATTTAGTAGATTACTTGAGAAGATTAATAGGCCTCCATTGAAAACAGCTAGTAATGCGGCTTTGCTGAATACTGGTGTGGAGAGAAATTCATAG 2202 0.445 MDCGVGSIVWVRRRNGSWWPGQILGPDDLSASHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKAFRCGEFDDCIEKAESSQGGPLKKREKYARREDAILHALELEKQILKKQGKPGARSLNTVRKGAVTSSSPETLGNDYEKCANSNSYIYCENEAAGSHFHSEVARDVNHLRGEVDYCETTPRMRDLQDFGLRIAPAKRKYSTSLDPKFGVDDGARGLSSGGVHMNGAGHVGSSRAKRSRCVYFQPESSDSLDYRETLPRAEMSSSQRRKEFPYHGSLVGETEYTFMDDVESDSSETASTDSDSDSSETEPDLDEDMTIFSETGHDAEEHENTSSEELDELAISSDMPHLYPRDVITNNEAVSKWQLKGKRNNRNLVKRSVGASDGKCIVYGTEADAEGRSSHLRHNKMGPSLHRYKFDFGDTFDDDDQTFGPEDEYSLTPKSISKGQSKFHRGVAWNDWAWDDHLVSKGYGDAKAYSPMYGDRYHFGGRVRPMLVNVDLKVQASYRKEHVPFISLMSKLDGRAIVGHPIQVEALKDGSSDILFPAIDDFNNDGTGFEGSSVLPPAWRTARRTANFRVPRPHVLSSNGAEVAGEFPSSDQEQSFDYKSLNTGNCSHQASLRKKSGLKSHRSLADKKSLKKVPKKLSLSSSQKTRTLSSLSTEHSLSRKPLHDSSSYQTDRLIKPEISGPPTVACIPVQLVFSRLLEKINRPPLKTASNAALLNTGVERNS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00197 733 SUPERFAMILY Tudor/PWWP/MBT 4 109 - -
Cca04g00197 733 MobiDBLite consensus disorder prediction 257 278 - -
Cca04g00197 733 MobiDBLite consensus disorder prediction 257 272 - -
Cca04g00197 733 MobiDBLite consensus disorder prediction 625 640 - -
Cca04g00197 733 ProSiteProfiles PWWP domain profile. 5 60 IPR000313 -
Cca04g00197 733 MobiDBLite consensus disorder prediction 646 680 - -
Cca04g00197 733 Gene3D - 1 115 - -
Cca04g00197 733 PANTHER T17B22.17 PROTEIN-RELATED 230 731 IPR044679 -
Cca04g00197 733 PANTHER T17B22.17 PROTEIN-RELATED 2 123 IPR044679 -
Cca04g00197 733 Pfam PWWP domain 6 86 IPR000313 -
Cca04g00197 733 MobiDBLite consensus disorder prediction 619 680 - -
Cca04g00197 733 MobiDBLite consensus disorder prediction 293 317 - -
Cca04g00197 733 PANTHER PWWP DOMAIN-CONTAINING PROTEIN-RELATED 2 123 - -
Cca04g00197 733 PANTHER PWWP DOMAIN-CONTAINING PROTEIN-RELATED 230 731 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00197 Cca-Chr4 1833897 1837215 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00197 - - gmx:102667517 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00197 04 1833897 1837215 Cca04g00197 04 1833897 1837215 ECH