Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00195 ATGCGCTTGATGGAAATTACATATACAATCGCTCAATCGTCTTCCCCTCAAACCTTTTCTCTTCCGGCTCCAATTCCTCAATGGCCTCAAGGACAAGGTTTTGCTTCCGGATTTGTAAATCTTGGTGAAATACAAGTTTCCAAGGTTAACAAGTTTGAGTTTATTTGGAGAAGCAGTTTTTTGCCAGATACAAAAAGTGCTGTTGCATTCTATAGGCCTGTAGGAGTACCTGATAGTTTCCATATCCTTGGTCACTATTGTCAACCTGTTGACAAGCCTTTACATGGTTTTGTACTTGTTGCAAGGGAAGTGGAAACTTGCATGCCCAAAACTGCTGACGATATTTGCAACCAAGATAAGTTACCTCCTCTGAAGAATCCCCGTGATTTTAAGTTAGTTTGGAATCAATATTCAGGAAGAATGGAAATGCCAGGTGTATACTTTTGGCTACCTGAACCTCCTGAAGGTTACAATGCTCTTGGCTACTTGGTAAAAAACAACCCTGACAAGCCTTTGTTGGATGAAATGTGCTGTGTTCGTTCTGACCTCACTGATAAGTGTCAAACATACCGCCAAATACTCACTGTTGGTTCTAGAAATCGAGAGTTTTCATTTCAGGTTTGGAGTTTGAGACCTTGTGATCGTGGCATGATAGGGAAAGGAGTTTCTGTTGGGACATTTTTCTGCAGCAATGGCTTGAACATGAGAGAAGAGCTTCCTGTTGCATGCTTGAAGAACCTAAATCATGTGCTACCAGCAATGCCAAATTTGCAGCAAATACATGCACTTATTAACCATTATGGCCCTACTGTTTTCTTTCATCCTGATGAAACTTACTTGCCATCTTCTGTGGATTGGTTTTTTAAAAATGGAGCCATGTTGTACACAAAGGGTGTGTCTAAAGGAGAGGAAATTGATGCAAATGGCTCAAATCTACCAACTGGGGGATCAAATGATGGGAAGTTTTGGATAGACTTGCCAAGTGATGGTCGAAGGGATTTTGTGAAACGTGGGGACTTGAAGAGTGCAAGGCTTTATGTTCATGTGAAGCCAGCACTTGGTGGAACTTTTAATGACATTGCAATGTGGGTGTTTTGCCCTTTCAATGGGCCAGCCACTCTGAAAATTGGAATTAAGAATGTAACAATGAGCAAGATTGGAGAACATGTTGGTGACTGGGAGCATTTTACACTTCGTATATGCAATTTCAGTGGAGAACTATATAGCATATACTTCTCTCAGCACAGTGGAGGTGAATGGGTGGATGCATATGACTTGGACTATATTGGAGGCAATAAAGCTATTGTTTACTCATCAAAATTTGGACATGCAAGTTACCCTCGTCCGGGAACATGTATCCAAGGTTCTCCAAAACTTGGGATTGGAATTAGGAATGATGCTGCTCGCAGTAATTTGTATGTGGATTCTAGTATTCACTATGAGCTTGTTGCAGCTGAGTATCTTAAAAATGATGTCACTGAGCCTCAATGGTTGCAGTTTATGAGAGAGTGGGGCCCCAAAATTGTTTATGATAGAAAAACTGAGCTGGATAAGGTAATCAATGCTCTTCCTCGCATACTTAAATATCCGGTTAGGAACTTATTTAACAAGTTTCCAGTGGAACTTTATGGTGAGGAAGGTCCCACTGGGCCAAAAGAGAAGAATAATTGGATAGAGGATGAAAGATGGTGA 1692 0.4096 MRLMEITYTIAQSSSPQTFSLPAPIPQWPQGQGFASGFVNLGEIQVSKVNKFEFIWRSSFLPDTKSAVAFYRPVGVPDSFHILGHYCQPVDKPLHGFVLVAREVETCMPKTADDICNQDKLPPLKNPRDFKLVWNQYSGRMEMPGVYFWLPEPPEGYNALGYLVKNNPDKPLLDEMCCVRSDLTDKCQTYRQILTVGSRNREFSFQVWSLRPCDRGMIGKGVSVGTFFCSNGLNMREELPVACLKNLNHVLPAMPNLQQIHALINHYGPTVFFHPDETYLPSSVDWFFKNGAMLYTKGVSKGEEIDANGSNLPTGGSNDGKFWIDLPSDGRRDFVKRGDLKSARLYVHVKPALGGTFNDIAMWVFCPFNGPATLKIGIKNVTMSKIGEHVGDWEHFTLRICNFSGELYSIYFSQHSGGEWVDAYDLDYIGGNKAIVYSSKFGHASYPRPGTCIQGSPKLGIGIRNDAARSNLYVDSSIHYELVAAEYLKNDVTEPQWLQFMREWGPKIVYDRKTELDKVINALPRILKYPVRNLFNKFPVELYGEEGPTGPKEKNNWIEDERW 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00195 563 Pfam Vacuolar protein sorting-associated protein 62 16 561 IPR009291 -
Cca04g00195 563 PANTHER - 10 563 - -
Cca04g00195 563 PANTHER PROCESSING PROTEIN PRP39, PUTATIVE-RELATED 10 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00195 Cca-Chr4 1815988 1818045 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00195 - - gmx:100793026 920.998