Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00194 ATGGCGGAGAATCGGAAAGCGGCGAAGCTTCCCGTGGAAGGAAAGCGCAACATCCTCATCACCAGTGCCTTGCCTTACGTCAACAACGTCCCTCATCTCGGCAACATCATTGGATGCGTGTTGAGTGCTGATGTGTTTGCTCGCTACTGTCGGCTTCGCGGTTATAACGCTATTTACATCTGCGGTACTGATGAGTATGGAACGGCGACAGAGACTAAAGCCATGGAAGAAAAATGCTCTCCTAAGGAGATTTGTGACAAGTACCATGCTGTTCATAAGGAAGTCTACGATTGGTTCAATATAAGTTTCGATGAATTTGGGCGGACTTCGTGCCCTGAGCAGACTGAAGTTTGCCAAGCAATTTTTAAAAAGATATTTGACAACAAGTGGCTCTCCGAGAACACAATGCAGCAGCTTTACTGCGACACTTGTGAAAAGTTCTTAGCTGATAGGCTTGTGGAGGGAACCTGCCCAACTCTGGGGTGTGACTATGATTCTGCACGAGGAGACCAATGTGAGAAGTGTGGAAAGCTTCTAAATCCAACAGAATTGAAAAGTCCCAGATGCAAGGTTTGCCAGAAAGCTCCTCGTATTCGTGATACAGACCACTTGTTTCTCGAACTCCCTCTATTGAAAGATAGATTGGAAAAATACATCAGTGAGATGTCTGTGGCTGGTGGATGGAGTCAGAATGCTATCCAAACAACAAATTCATGGCTTAGAGAAGGATTAAAGCCACGCTGTATTACGAGGGATTTAAAGTGGGGGGTTCCTGTTCCACATGAAAAATACAGTGACAAGGTTTTCTATGTTTGGTTTGATGCACCTATTGGATATGTCTCAATCACTTCGTGTTACACACGTGATTGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGTTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTTTACTTGGAACTGGTGAAAACTGGACATTAATGAAGACTATTAGTGTTACAGAATACTTGAATTATGAAGCAGGAAAATTTTCTAAGAGCAAAGGCATTGGGGTATTTGGTAATGACGTGAAAGATACTAATATTCCAGTTGAAGTGTGGAGATATTACTTGCTCACAAATAGGCCCGAGGTATCAGATACATTATTTACTTGGCCTGACTTGCAAGCTAAATTAAATAGTGAGTTGTTGAATAATTTGGGCAACTTCATCAACAGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCATTATTCCCTCTGTTCCTGATGATGTAAGTGGTGACTCGCATAATTTGACCAAGAAATTGGCTGATAAAGTTTCTGCATATATAGATCAATACATAGAAGCAATGGAAAAGGTTAAACTAAAGCAAGGATTGAAAACTGCAATGAGCATATCTAGCGAGGGAAATGCATATCTGCAGGAAGCAGAATTCTGGCGCCTTTACAAGGAAAACAGATCTCTCTGCTCCCTTGTCATGAAAACTGCAGCTGGGATTGTGTATCTTCTTGCTTGTTTATTAGAACCTTTTATCCCATCTTTCACTCTTGAAGTGTTTAAGCAGCTAAATTTGCCTGCGGAGATACATGTCTCACTTTGTGATGAGAAAGGGGATGTTAATAGGGTAAAGAAACCCTGGGATATCATAAGTGCTGGTCATAGAATTGGAACACCCAAGCCATTGTTCAAGGAACTGAAAGATGAAGAAGTGGAGTTCTACAGGAAGAAATTTGCAGGAAGTCAAGCTGATAGGATTGTCCGTGCAGAGGCTGAAGCTGAAAAGGTTGCTGAGCAACTGAAGAAAACAAAAGTTTCAGCGCGTGCTGAACCAGATATTATTACCATCACAAGGCTTGATATCCGGGTTGGACTCATAAAAAAAGCTCAAAAACATCCTGATGCAGATTCGCTATATGTTGAAGAGATTGATGTTGGTGAAGAACAAACCAGAACTGTTGTCAGTGGGCTTGTCAAGTATATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGCAACCTAAAACCAGCAACCATGAGGGGCATCAAATCCCAAGCAATGGTCCTTGCTGCTTCCAATGATGATCACACCAAGGTTGAGTTGGTTGAGCCACCCAGTTCTGCTCAGGTTGGAGAAAGAATTACATTCCCAGGGTACGAAGGTAGTCCTGATGAACTCTTAAACCCAAAGAAGAAAGTATGGGAAACATTGCAAGTCGATTTGCACAGTAATGAGGAACTAGTGGCATGCTACAAAGATGTTCCATTAACCACATCAGCTGGCATTTGCAAGGTTTCATCCATACGCTCTGGATCGATAAGTGTAGCTACCATTTTTACTCCATGTCCAAATGCATTGATCCCTCCCATCCACATTAGTGAATGGTATGTTGAGTATCGCTTTAGTGTTTTCAGAATCGAAAATTGCTTTAACCAGATCAACATTCCAACTGCAATTCTCCTAGGAGATAAGATCTTTCACTTTAAGCTCCTGGAGGCCATCAATCTCAAGCGTACAAACATGGCAATTTCCATTGGTTTGTCTCagctaaggCATGAAAATCAAATCGCCACACCCTTGCCTTACTCTAGGGTTTTTGTTGCTCCTGGCCGTACACTACTCACTCTAGGGTTTTACCACTCTCATTCCATGGCCGCCGAGAAGCTCCGAGATTTGAGCCAACCGATTGACGTCCCCTTGCTCGACGCCACTGTCGCCGCCTTCTATGGCACCGGATCTAAGGAAGAGAGAAATGCTGCGGATCAGATTCTGCGTGACTTACAAAATAATCCCGATATGTGGCTTCAAGTCATGCATATTTTGCAGAAGACTCAAAATCTCAATACCAAGTTCTTTGCCTTACAGGTTCTAGAAGGTGTAATTAAGTATAGATGGAATGCATTGCCTGTTGAGCAGCGAGATGGAATGAAAAATTTCATCTCTGACGTTATAGTACAGCTTTCTAGCAATGAGGCTTCATTTCGAGCAGAAAGGCTGTATGTCAACAAACTCAATATTATATTAGTTCAGATTTTGAAGCATGAGTGGCCAGCAAGGTGGCGAAGCTTTATTCCTGACCTAGTCTCAGCAGCTAAGACTAGTGAAACAATTTGTGAGAATTGTATGGCTATATTGAAACTCTTGAGTGAAGAGGTTTTTGATTTTTCAAGGGGAGAGATGACTCAGCAGAAGATTAAAGAGCTTAAACAGTCATTGAACAGTGAATTTCAACTCATACATGAGTTATGCTTATATGTTTTATCTGCGTCCCAAAGGGCTGAACTCATTCGTGCAACTTTATCTACATTACATGCCTTCTTATCATGGATTCCCTTGGGTTATATATTTGAATCGCCATTGCTTGAGACTCTCCTAAAATTTTTCCCAGTTCCAGCTTATCGGAACCTAACATTGCAATGTTTAACTGAGgtggcagctcttcaatttgggaaTTATTATGATGTGCAGTATGTGAAGATGTATAACATATTCATGGCCCAGTTGCAGGGCATACTCCCACCAactacaaatatacctgaggcatatgctcagggttcaagtgaggaacaatgttttggtgcctttctgtttatgcaggttcacattcgcatcttggaatccactcaagagaatatagcttctttgctaattggacttgaataccttatcaacatttcgtacgtagatgatactgaggtttttaagGTCTGTTTGGACTACTGGAATTCCTTGGTATCAGAGTTGTTTGAACCACACCGTAGTTTGGACAATCCTGCAGCTGCTGCAACCATGATGGGACTTCAGGTACCAGCAATGCTCCCTGGAATGGTTGATGGGCATGGTTCTCAGCTTCTTCAGCGCCGGCAGCTTTATGCTGGTCCCATGTCCAAGTTGAGAATGCTTATGATCTGTCGCATGGCTAAGCCTGAAGAGGTTCTAATTGTTGAAGATGAAAATGGAAACATTGTTCGCGAAACCTTGAAGGACAATGATGTTCTTGTTCAATATAAGATTATGAGGGAGACTCTTATTTACTTGTCACATCTTGACCATGATGATACTGAAAAGCAGATGCTGAGGAAATTAAGTAAACAGCTTAGTGGTGAGGACTGGACATGGAACAATTTGAATACACTATGTTGGGCAATAGGTTCAATCTCTGGTTCCATGATGGAAGAACAGGAAAACAGATTTTTGGTTATGGTGattcgtgatttattaaacctatgtgaaatcacaaagggaaaagataacaaagctgttattgcaagcaatatcatgtatgttgttgggcaatatccacggtttttaagagctcattggaagttccttaaaactgttgtgaacaaattgtttgagtttatgcatgagactcatcctggagttcagGATATGGCCTGTGACACATTTTTGAAAATAGTCCAGAAGTGCAAGCGTAAATTTGTGATCACACAGGTTGGGGAAAATGAGCCATTTGTGTCTGAGCTTTTGACAGGCCTTCCCATAACCATTGCAGATCTTGAACCCCATCAGATACATTCCTTCTATGAATCTGTTGGTCATATGATTCAGGCAGAGTCTGACGCACAGAAGAGAGATGAATTTCTTCAGCGGTTGATGGAGCTCCCAAATCAGAAATGGATGGAAATTATAGGGCAGGCACATCAAAATGTTGATTTTTTAAAGGATCAGGATGTAATCCGGACAGTGCTTAATATATTGCAGACAAACACAAGTGTTGCATCTTCTTTAGGGACATATTTCTTGCCCCAAATCTCATTGATCTTTTTGGACATGTTAAATGTGTACAGAATGTACAGTGAACTTATTTCAAAAAGTATTACAGATGGGGGGCCTTTTGCATCTAGAACATCCTATGTGAAACTTCTACGTTCGGTTAAGAGGGAGACACTTAAGCTGATCGAGACATTCTTGGATAAGGCTGAAGACCAACCCCAAATTGGAAAACAATTTGTGCCACCAATGATGGATCCTGTTCTTGGAGATTATGCCAGGAATGTTCCTGATGCAAGGGAATCGGAGGTTTTGTCACTTTTTGCCACAATTGTGAACAAGTATAAAGCTGCAATGATAGAAGATGTACCTCGCATATTTGAAGCTGTTTTTCAGTGCACACTTGAGATGATTACAAAAAATTTTGAAGACTACCCAGAGCATCGGCTCAAGTTCTTCTCTCTACTCCGTGCCATAGCTACTCATTGTTTTCCTGCATTAATCTGCTTGTCAAGTCAGCAATTGAAGCTTGTTATGGACTCAATCATATGGGCATTTCGTCATACAGAAAGAAATATAGCTGAAACTGGGCTGAACCTGTTGTTGGAGATGCTGAAAAAGTTTCAGGGTTCAGAGTTCTGTAATCAGTTTTATCGGTCATACTTTTTGACAATTGAACAAGAGATATTCGCTGTCTTAACTGACACTTTTCATAAGCCTGGGTTCAAATTACATGTCTTGGTGCTTCAGCATTTGTTCTGTTTGCTGGAAACTGGTGTCCTAACTGAGCCTCTTTGGGATGTTGCTACAAGTCCATATTCATACTCAAGTAATGCAGTGTTTGTACGTGAGTTTACCATAAAACTTCTAAGCACTTCATTTCCCAACATGACAGCATCAGAGGTTACCCAATTTGTTAATGGACTCTTTGAGTCCACCAATGATCTCTCAACGTTTAAAAATCACATAAGAGATTTTCTTATTCAGTCAAAAGAATTTTCAGCTCAGGATAACAAAGATCTATATGCTGAAGAGGCTGCAGCTCAGAGAGAGAGAGAACGACAAAGAATGCTTTCTATTCCAGGGCTTATTGCCCCAACGTTTTCCTCTTCCCAATATTTAAAAGTTGGGAGTGGCTTGGCAAGGGTTCCTGATTTCAGAGTTTTCGCTGACCGGGGACACTGCTGCCTTGTCCATTGGGATGGAAGAAGACTCATTCCGA 5992 0.3887 MAENRKAAKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKEICDKYHAVHKEVYDWFNISFDEFGRTSCPEQTEVCQAIFKKIFDNKWLSENTMQQLYCDTCEKFLADRLVEGTCPTLGCDYDSARGDQCEKCGKLLNPTELKSPRCKVCQKAPRIRDTDHLFLELPLLKDRLEKYISEMSVAGGWSQNAIQTTNSWLREGLKPRCITRDLKWGVPVPHEKYSDKVFYVWFDAPIGYVSITSCYTRDWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDVKDTNIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNSELLNNLGNFINRVLSFIAKPAGQGYDSIIPSVPDDVSGDSHNLTKKLADKVSAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQEAEFWRLYKENRSLCSLVMKTAAGIVYLLACLLEPFIPSFTLEVFKQLNLPAEIHVSLCDEKGDVNRVKKPWDIISAGHRIGTPKPLFKELKDEEVEFYRKKFAGSQADRIVRAEAEAEKVAEQLKKTKVSARAEPDIITITRLDIRVGLIKKAQKHPDADSLYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPATMRGIKSQAMVLAASNDDHTKVELVEPPSSAQVGERITFPGYEGSPDELLNPKKKVWETLQVDLHSNEELVACYKDVPLTTSAGICKVSSIRSGSISVATIFTPCPNALIPPIHISEWYVEYRFSVFRIENCFNQINIPTAILLGDKIFHFKLLEAINLKRTNMAISIGLSQLRHENQIATPLPYSRVFVAPGRTLLTLGFYHSHSMAAEKLRDLSQPIDVPLLDATVAAFYGTGSKEERNAADQILRDLQNNPDMWLQVMHILQKTQNLNTKFFALQVLEGVIKYRWNALPVEQRDGMKNFISDVIVQLSSNEASFRAERLYVNKLNIILVQILKHEWPARWRSFIPDLVSAAKTSETICENCMAILKLLSEEVFDFSRGEMTQQKIKELKQSLNSEFQLIHELCLYVLSASQRAELIRATLSTLHAFLSWIPLGYIFESPLLETLLKFFPVPAYRNLTLQCLTEVAALQFGNYYDVQYVKMYNIFMAQLQGILPPTTNIPEAYAQGSSEEQCFGAFLFMQVHIRILESTQENIASLLIGLEYLINISYVDDTEVFKVCLDYWNSLVSELFEPHRSLDNPAAAATMMGLQVPAMLPGMVDGHGSQLLQRRQLYAGPMSKLRMLMICRMAKPEEVLIVEDENGNIVRETLKDNDVLVQYKIMRETLIYLSHLDHDDTEKQMLRKLSKQLSGEDWTWNNLNTLCWAIGSISGSMMEEQENRFLVMVIRDLLNLCEITKGKDNKAVIASNIMYVVGQYPRFLRAHWKFLKTVVNKLFEFMHETHPGVQDMACDTFLKIVQKCKRKFVITQVGENEPFVSELLTGLPITIADLEPHQIHSFYESVGHMIQAESDAQKRDEFLQRLMELPNQKWMEIIGQAHQNVDFLKDQDVIRTVLNILQTNTSVASSLGTYFLPQISLIFLDMLNVYRMYSELISKSITDGGPFASRTSYVKLLRSVKRETLKLIETFLDKAEDQPQIGKQFVPPMMDPVLGDYARNVPDARESEVLSLFATIVNKYKAAMIEDVPRIFEAVFQCTLEMITKNFEDYPEHRLKFFSLLRAIATHCFPALICLSSQQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKKFQGSEFCNQFYRSYFLTIEQEIFAVLTDTFHKPGFKLHVLVLQHLFCLLETGVLTEPLWDVATSPYSYSSNAVFVREFTIKLLSTSFPNMTASEVTQFVNGLFESTNDLSTFKNHIRDFLIQSKEFSAQDNKDLYAEEAAAQRERERQRMLSIPGLIAPTFSSSQYLKVGSGLARVPDFRVFADRGHCCLVHWDGRRLIP 1997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00194 1997 SMART CRM1_C_2 1603 1925 IPR014877 GO:0005049
Cca04g00194 1997 PRINTS Methionyl-tRNA synthetase signature 101 112 IPR033911 GO:0004825|GO:0006431
Cca04g00194 1997 PRINTS Methionyl-tRNA synthetase signature 304 319 IPR033911 GO:0004825|GO:0006431
Cca04g00194 1997 PRINTS Methionyl-tRNA synthetase signature 20 33 IPR033911 GO:0004825|GO:0006431
Cca04g00194 1997 PRINTS Methionyl-tRNA synthetase signature 399 410 IPR033911 GO:0004825|GO:0006431
Cca04g00194 1997 PRINTS Methionyl-tRNA synthetase signature 269 280 IPR033911 GO:0004825|GO:0006431
Cca04g00194 1997 PRINTS Methionyl-tRNA synthetase signature 53 67 IPR033911 GO:0004825|GO:0006431
Cca04g00194 1997 Gene3D HUPs 17 400 IPR014729 -
Cca04g00194 1997 CDD tRNA_bind_EMAP-II_like 623 727 - -
Cca04g00194 1997 Pfam Putative tRNA binding domain 630 724 IPR002547 GO:0000049
Cca04g00194 1997 Pfam Importin-beta N-terminal domain 932 998 IPR001494 GO:0006886|GO:0031267
Cca04g00194 1997 CDD MetRS_core 17 387 IPR033911 GO:0004825|GO:0006431
Cca04g00194 1997 PANTHER EXPORTIN 1/5 899 1205 IPR045065 GO:0005049|GO:0006611
Cca04g00194 1997 CDD Anticodon_Ia_Met 396 532 IPR041872 -
Cca04g00194 1997 Gene3D - 401 574 - -
Cca04g00194 1997 Pfam CRM1 / Exportin repeat 3 1380 1429 IPR040485 -
Cca04g00194 1997 Gene3D - 623 792 IPR012340 -
Cca04g00194 1997 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 25 36 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca04g00194 1997 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 404 588 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca04g00194 1997 PANTHER EXPORTIN 1A-RELATED 899 1205 - -
Cca04g00194 1997 TIGRFAM metG: methionine--tRNA ligase 18 555 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Cca04g00194 1997 SUPERFAMILY ARM repeat 917 1915 IPR016024 -
Cca04g00194 1997 SUPERFAMILY Nucleotidylyl transferase 15 399 - -
Cca04g00194 1997 Gene3D - 153 189 IPR029038 -
Cca04g00194 1997 SMART IBN_N_2 932 998 IPR001494 GO:0006886|GO:0031267
Cca04g00194 1997 Hamap Methionine--tRNA ligase [metG]. 16 586 IPR023458 GO:0004825
Cca04g00194 1997 Coils Coil 595 619 - -
Cca04g00194 1997 Gene3D - 891 1949 IPR011989 -
Cca04g00194 1997 PANTHER EXPORTIN 1A-RELATED 1209 1957 - -
Cca04g00194 1997 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 153 189 IPR029038 -
Cca04g00194 1997 ProSiteProfiles tRNA-binding domain profile. 624 727 IPR002547 GO:0000049
Cca04g00194 1997 Pfam CRM1 C terminal 1603 1924 IPR014877 GO:0005049
Cca04g00194 1997 PANTHER EXPORTIN 1/5 1209 1957 IPR045065 GO:0005049|GO:0006611
Cca04g00194 1997 Pfam Chromosome region maintenance or exportin repeat 1226 1261 IPR041123 -
Cca04g00194 1997 Pfam CRM1 / Exportin repeat 2 1299 1366 IPR041235 -
Cca04g00194 1997 ProSiteProfiles Importin-beta N-terminal domain profile. 932 998 IPR001494 GO:0006886|GO:0031267
Cca04g00194 1997 Pfam tRNA synthetases class I (M) 18 412 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cca04g00194 1997 Pfam Exportin 1-like protein 1010 1153 IPR013598 -
Cca04g00194 1997 Pfam Anticodon binding domain of methionyl tRNA ligase 437 591 IPR041872 -
Cca04g00194 1997 SUPERFAMILY Nucleic acid-binding proteins 622 786 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00194 Cca-Chr4 1782037 1807645 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00194 K14290 - gmx:100802384 2045.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00194 04 1782037 1807645 Cca04g00194 04 1782037 1807645 ECH