Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00193 ATGGCATCCGATCCTGAGCAACCCACCCGTTCCTCTCTCGCACAGGAAGGAAGGTCATCCGGTGAGATTGGGAGTGCAAGGGAGCCTCTACTTAATAATGGGGTTCATGACCCTGAAAGCTATTCCATCTCTGCTGCAATTCTCCCATTTCTCTTCCCAGCTTTGGGTGGCCTACTATATGGCTATGATATTGGAGCCACATCTTCTGCAACCGTTTCCATTGAGTCTCCAACACTAAGTGGAGTATCTTGGTACAACTTGTCTTCCGTTGAAATTGGTCTTCTTACTAGTGGATCATTGTATGGTGCTTTAATTGGCTCTGTGTTGGCCTTCAACATTGCTGACTTCTTAGGTAGAAGAAGGGAGCTGATTGTTACTGCATTACTGTATCTTGTTGGAGCACTTGTAACAGCATTTGCTCCTAATTTTCCTGTATTGGTTCTTGGGAGACTTTTATTTGGCATAGGAATTGGACTGGCTATGCATGCTGCTCCGATGTACATTGCAGAGACAGCTCCAACGCCAATACGTGGACAACTAATCTCTCTAAAAGAGTTCTTTATAGTACTTGGGATTGTTGCAGGATATGGTATTGGTAGCTTGTTTGTAGACACTGTAGCTGGGTGGCGGTATATGTTTGGAGTTAGTAGTCCTGTTGCAATAATCATGGGAATTGGAATGTGCTGGCTCCCACCTTCTCCTAGATGGCTACTTTTACGTGCTATACAGAGAAAAGGGGATGTTCAGAATTTGAAAGACACAGCAATTCGTAGTTTGTGCCAGCTTCGAGGTCAGGCTATTCATGGTTCAGCTCCTCAGCTAGTAGATGAGATTCTGGCAGAACTTTCTTATGTAGGTGAAGAAAAAGAAGCTACCTTTGGAGAAATGTTCCAAGGAAAATGCTTGAAAGCCCTTTGGATTGGTGCAGGATTGGTCTTGTTTCAGCAGATCACAGGGCAACCAAGTGTGCTCTACTATGCTGCATCAATCCTTCAGAGTGCAGGATTCTCCGGAGCATCTGATGCAACCCGGGTCTCTATTATCCTTGGGTTTTTTAAGTTGATTATGACTGGAGTTGCTGTTGTCGTTGTTGATAGACTTGGTAGGAGACCTTTACTACTTGGGGGAGTTTCAGGGATGGTGATCTCTTTGTTCCTTCTGGGTTCATATTACATTTTCTTGGATAACGCAGCAGTTGTTGCGGTAGTTGGTCTGCTGTTGTACGTAGGTTGTTATCAGATTTCCTTTGGTCCAATTGGTTGGCTAATGATAGCAGAGATTTTCCCCTTGCGCCTAAGAGGTCGAGGACTAAGTTTAGCTGTACTCGTCAATTTTGGTGCAAATGCCCTGGTGACATTTGCTTTTTCCCCACTGAAGGAATTACTGGGAGCAGGAATTTTGTTTTACATATTTTTTGTAATAGCCGTGGCAGCTCTTGCATTCATATACTTCGTTATACCAGAAACAAAGGGGCTTACACTAGAGGAGATCGAGGCCAAATGCCTCTAA 1509 0.442 MASDPEQPTRSSLAQEGRSSGEIGSAREPLLNNGVHDPESYSISAAILPFLFPALGGLLYGYDIGATSSATVSIESPTLSGVSWYNLSSVEIGLLTSGSLYGALIGSVLAFNIADFLGRRRELIVTALLYLVGALVTAFAPNFPVLVLGRLLFGIGIGLAMHAAPMYIAETAPTPIRGQLISLKEFFIVLGIVAGYGIGSLFVDTVAGWRYMFGVSSPVAIIMGIGMCWLPPSPRWLLLRAIQRKGDVQNLKDTAIRSLCQLRGQAIHGSAPQLVDEILAELSYVGEEKEATFGEMFQGKCLKALWIGAGLVLFQQITGQPSVLYYAASILQSAGFSGASDATRVSIILGFFKLIMTGVAVVVVDRLGRRPLLLGGVSGMVISLFLLGSYYIFLDNAAVVAVVGLLLYVGCYQISFGPIGWLMIAEIFPLRLRGRGLSLAVLVNFGANALVTFAFSPLKELLGAGILFYIFFVIAVAALAFIYFVIPETKGLTLEEIEAKCL 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00193 502 Pfam Sugar (and other) transporter 52 499 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca04g00193 502 PRINTS Sugar transporter signature 57 67 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00193 502 PRINTS Sugar transporter signature 147 166 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00193 502 PRINTS Sugar transporter signature 315 325 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00193 502 PRINTS Sugar transporter signature 402 423 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00193 502 PRINTS Sugar transporter signature 425 437 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00193 502 ProSiteProfiles Major facilitator superfamily (MFS) profile. 49 490 IPR020846 GO:0022857
Cca04g00193 502 MobiDBLite consensus disorder prediction 1 19 - -
Cca04g00193 502 ProSitePatterns Sugar transport proteins signature 2. 152 177 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca04g00193 502 TIGRFAM SP: MFS transporter, sugar porter (SP) family 41 497 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca04g00193 502 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 3 502 - -
Cca04g00193 502 SUPERFAMILY MFS general substrate transporter 50 498 IPR036259 -
Cca04g00193 502 ProSitePatterns Sugar transport proteins signature 1. 360 376 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca04g00193 502 CDD MFS_GLUT10_12_Class3_like 52 497 - -
Cca04g00193 502 MobiDBLite consensus disorder prediction 1 29 - -
Cca04g00193 502 ProSitePatterns Sugar transport proteins signature 1. 110 127 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca04g00193 502 Gene3D MFS general substrate transporter like domains 41 500 IPR036259 -
Cca04g00193 502 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 3 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00193 Cca-Chr4 1768799 1776624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00193 1 502 Organic Solute Cotransporters AT5G17010 75.000 0.0 753
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00193 - - gmx:100801856 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00193 04 1768799 1776624 Cca04g00193 04 1768799 1776624 ECH