Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00185 ATGTTGGAGTTATGTAGGAGAAGGCTGAAACTCCAAGGAACAGAGTCAATAACACCAACAAACAAGTGGAAGCGCTTCTCTTGTTGTTCAACCTTTTCTCCAAGTGCAATGAGTGAGAATTTGATGGAAAAAGTCAACGCTTTGGGGGAGCGTCTCAAAGTAGGTGGGGCTGAGGTGGGTCGGAAGATGAGTGCTGGCATGAGTTCTGTGAGCTTCAAGGTGAAGGAGTTTTTCCATGATCCAACCCATGCTGATAAACTCGTTGGAGAAGCTACTTCTGAGGCTCTTCATCACCCTGACTGGTCCATCATTCTTCATATATGTGACTTGACCAATGCTCATAAACTCAACACTGGTGAATTGGTACGTGCTATAAAGAAAAGGGTCGTGGCCAAGAGTCCTACTGCTCAGTACCTGGCTTTGGTTTTGCTTGAAGCATTGCTCAAGAACTGTGACAAGGCTTTCTTGGAGGTGGCCACTGAGAGGGTCCTTGATGAGATGGTCAAGCTCATTCATGACGATCAGACTGTTGTTGCTAACCGTAATAAGGCTTTGATGATGATTGAGGCGTGGGGAGAGTCAACCATTGAGCTTCGCTATCTGCCTGTCTATGCACAAACTTACAAGAGTTTGAAGTCAAGGGGTATTCGATTCCCTGGCCGTGACAATGAAAGTTTAGCTCCTATTTTTACTCCTCCTCGTTCTGCCACTGCTCCAGAAGCTGCTGTGAATCTTGCACATCTTATTCAGCGTGATATTCATGTGCAAAGTTTTTCGCCTGTAACTCCTCCTGGTTCTGCCACTGCTCCAGAGGCTGATGTCAGTCTTGGACATCATATGCAGCAGCATGATATTCATGTGCTAAGTTTTACGTCTGAACAAACAAAGGAAGCTTTTGAGGTTGCGATAAATAGCATTGAGCTTCTTTCTACTGTGTTATCTACTTCAATGCACCAGGATGTTTTAAAGGATGATTTGACCACCACATTAGTACAACAGTGTCGACAGTCCCAGTCTACTGTCCATAGAATCATTGAGACTGATGGGGATAATGAAGCACTGCTTTTTGAGGCTTTGGATATTAATGATGAGATTCAGAAGGTTCTCTCCAAATATgaagagttgaagaagaagaagaagGCTACAGGTGCTCCATATGAGGCTGAACCAGCTATGGTACCTGATGCTATTGAGCCTGATGAGTCACCCAATTTTACAAAAGAGGAAGCCCTGATTAGAAAACCATCTGGTTCAAGAGTTGGAGTCCATGGAGGGAGCCACgatgatatgatagatgatcttgatgagatgatTTTTGGGAAAAAGGGAAGGGATGCATTTGATGGGGGATTATATCCAAAGAAACAGCAATCATCTAAAGATGATCTCATCTCCTTATGA 1401 0.4254 MLELCRRRLKLQGTESITPTNKWKRFSCCSTFSPSAMSENLMEKVNALGERLKVGGAEVGRKMSAGMSSVSFKVKEFFHDPTHADKLVGEATSEALHHPDWSIILHICDLTNAHKLNTGELVRAIKKRVVAKSPTAQYLALVLLEALLKNCDKAFLEVATERVLDEMVKLIHDDQTVVANRNKALMMIEAWGESTIELRYLPVYAQTYKSLKSRGIRFPGRDNESLAPIFTPPRSATAPEAAVNLAHLIQRDIHVQSFSPVTPPGSATAPEADVSLGHHMQQHDIHVLSFTSEQTKEAFEVAINSIELLSTVLSTSMHQDVLKDDLTTTLVQQCRQSQSTVHRIIETDGDNEALLFEALDINDEIQKVLSKYEELKKKKKATGAPYEAEPAMVPDAIEPDESPNFTKEEALIRKPSGSRVGVHGGSHDDMIDDLDEMIFGKKGRDAFDGGLYPKKQQSSKDDLISL 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00185 466 CDD GAT_GGA_like_plant 299 375 - -
Cca04g00185 466 Pfam GAT domain 304 377 IPR004152 GO:0035091|GO:0043130
Cca04g00185 466 Gene3D - 77 237 IPR008942 -
Cca04g00185 466 ProSiteProfiles VHS domain profile. 91 219 IPR002014 GO:0035091|GO:0043130
Cca04g00185 466 MobiDBLite consensus disorder prediction 444 466 - -
Cca04g00185 466 Pfam VHS domain 84 215 IPR002014 GO:0035091|GO:0043130
Cca04g00185 466 SUPERFAMILY GAT-like domain 216 378 - -
Cca04g00185 466 SUPERFAMILY ENTH/VHS domain 78 219 IPR008942 -
Cca04g00185 466 Gene3D - 293 387 IPR038425 -
Cca04g00185 466 PANTHER TOM1-LIKE PROTEIN 1 257 466 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cca04g00185 466 PANTHER TOM1-LIKE PROTEIN 1 37 259 IPR044836 GO:0035091|GO:0043130|GO:0043328
Cca04g00185 466 CDD VHS 84 213 - -
Cca04g00185 466 ProSiteProfiles GAT domain profile. 290 377 IPR004152 GO:0035091|GO:0043130
Cca04g00185 466 Coils Coil 358 382 - -
Cca04g00185 466 SMART VHS_2 84 215 IPR002014 GO:0035091|GO:0043130
Cca04g00185 466 PANTHER TOM1-LIKE PROTEIN 1 257 466 - -
Cca04g00185 466 PANTHER TOM1-LIKE PROTEIN 1 37 259 - -
Cca04g00185 466 MobiDBLite consensus disorder prediction 395 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00185 Cca-Chr4 1692481 1695472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00185 - - ccaj:109799203 887.486
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00185 04 1692481 1695472 Cca04g00185 04 1692481 1695472 ECH