Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00183 ATGGTGAGATCAGTGAAAGTTAGCAACATCTCTTCGGGTGCAACCGAGCAAGATTTGAGGGAATTTCTTACTTTCCCGGGAACAATCGAACATATTGAAATGCAAAGTGACACCGGAGGTTCCCAAGTTGCACATGTTACCTTCAGTACTCCAGACGGGGCTGAAACTGCAGTTCTTCTCTCGGGAGCAGTGGTGTGTGGACAGTCTCTAACCATAGATTTGGCTCCAGAATATGCTCTCCCTGGCTCTACTGCATCTGAAACACAGACTAGTAATGATGAGAATCCTGAATCTGGTTCTGGTTTGAGAAAGGCAGAGGATGTTGTAACCAGCATGCTTGCTAAGGGTTTCATTTTGGGAAAAGGTGCATTGGACCGAGCAAAAACCTTTGATGAGAAGCACCAGCTTAGTTCCAAGGCGACAGCAAAAGTTGTTTCTTTGGACCAGAAGGTTGGTTTAAGTGAAAAGATCAGTGCTGGGACAGTTTTGGTGAATGGCAAGGTTAAAGAAATGGATGAGAAATACCAAGTATCTGAGAAGACCAAGTCTGCAATTTCAGTGGCTGAGCAGTCAGTGAGTAGTGCTGGATCAGCCATAATGAAGAACCGTTATGTGTTGACTGGGGCTACATGGGTCACAGGTGCTTACAACAGGGTTGCTAAGGCTGCTGAGGAGGTGGGACAGAAAACTAAGGAGAAGGTTTTGGCACAGGATAATCAAGGAAAGACTGAAGAAGGTAATGTCCAAAACCCCACGTCTGAAACCACCACACCTAATGAACCCTCCAAACCTGGACCTCATCAAGCCACCACGGGTGATCATCCTTCCAATCCTGTAACAACTCAAGCTTTGACCACGGGTGATCATCCTTCCAATCCTGTAACAACTCAAGCTTTGACCACTGGTGATCATCCTTCCAATCCAGTAACAACTCAAGCTTTGACCACAGGTGATCATCCTTCCAATCCTGTAACAGCTCAAGCTTTGACCAAGGGTGATGTTCCTTCCAATCCTACAACAACTCATGGTATGACCACCGGTGATCATCCTTCCAATCCTGCAACAACTCAAGCTTTGACCACGGGTGACCACCCTTCCAATCCTGCAACAACTCAAAGTTTGACCACAGGTGATCATCCTTCCAATCCTGCAACAACTCAAGGTTTGACTCTCTGA 1176 0.4634 MVRSVKVSNISSGATEQDLREFLTFPGTIEHIEMQSDTGGSQVAHVTFSTPDGAETAVLLSGAVVCGQSLTIDLAPEYALPGSTASETQTSNDENPESGSGLRKAEDVVTSMLAKGFILGKGALDRAKTFDEKHQLSSKATAKVVSLDQKVGLSEKISAGTVLVNGKVKEMDEKYQVSEKTKSAISVAEQSVSSAGSAIMKNRYVLTGATWVTGAYNRVAKAAEEVGQKTKEKVLAQDNQGKTEEGNVQNPTSETTTPNEPSKPGPHQATTGDHPSNPVTTQALTTGDHPSNPVTTQALTTGDHPSNPVTTQALTTGDHPSNPVTAQALTKGDVPSNPTTTHGMTTGDHPSNPATTQALTTGDHPSNPATTQSLTTGDHPSNPATTQGLTL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00183 391 MobiDBLite consensus disorder prediction 82 98 - -
Cca04g00183 391 MobiDBLite consensus disorder prediction 82 103 - -
Cca04g00183 391 MobiDBLite consensus disorder prediction 240 391 - -
Cca04g00183 391 SUPERFAMILY RNA-binding domain, RBD 3 77 IPR035979 GO:0003676
Cca04g00183 391 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 70 IPR000504 GO:0003723
Cca04g00183 391 MobiDBLite consensus disorder prediction 225 391 - -
Cca04g00183 391 PANTHER BINDING PARTNER OF ACD11 1 2 251 - -
Cca04g00183 391 MobiDBLite consensus disorder prediction 225 239 - -
Cca04g00183 391 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 251 - -
Cca04g00183 391 SMART rrm1_1 4 73 IPR000504 GO:0003723
Cca04g00183 391 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 77 IPR000504 GO:0003723
Cca04g00183 391 Gene3D - 2 79 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00183 Cca-Chr4 1675232 1678262 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00183 - - ccaj:109798678 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00183 04 1675232 1678262 Cca04g00183 04 1675232 1678262 ECH