Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00178 ATGGCTTCAAAATCTAGACCCAATCTATCTGAAAATCCCAACAAAGCATCAATGGCAACTCCTAGAGGCAGTAAAGGTAGCAGAGTAGTGTCCAAATCAGAATCTGACTCACCATCTCCTTTGCAAAATTCACGCCTTTCTGTGGAACGATCACCACGATCTGTGAATTCAAAGCCCACTATAGAGAGGAAATCACCAAGACCCACCTCCACCCCAACTGATAAACAACCTCCAAGAGTTGTGAAGAGTTCAGAGTTGCAGAGCCAATTGAATCTTGCTCAAGAAGATCTAAAGAAAGCAAAGGAGCAGCTCATTCAGGCTGAGAAGGAGAAGCTGAAAGCAATAGATGAATTGAAAGAAGCACAGAGAGTGGTGGAGGAAGCCAATGAGAAACTCAGGGAAGCATTGGTGGCTCAAAAACGGGCTGAGGAGAATTCTGAGATTGAGAAGTTCCGAGCTGTGGAATTGGAACAGGCTGGAATTGAAACTGTgaagaagaaagaagaagaatggaagaaAGAGATTGAAAGTGTGAGGAACCAACATGCTTTGGACATGGCTGCTCTTCTCTCCACCACCGAGGAGCTTGAGCGAGTTAAACAGGAACTCACCATGACTTGTGATGCAAAGAACCAGGCACTGAGTCATGCAGATGATGCAACTAAAATTGCCGAGATTCATGCAGAGAAAGCAGAATTTTTTTCAGCTGAATTGATGCGATTGAAGGGCTTACTAGATTCAAAACTGGAAACTGAGGCCACTGAAAATGAGCATATATTGAAACTGAAAACAGAGATAGAAGCTCTTAAGGAAGAACTTGAAAAGGCAAAGGGTTATGATGAGAAGTTGTCAGAGAAAGAAGCTTTTATTGAACAGCTTAATGTGGAGCTTGAAGCTTCAAAGATGGCTGAATCTTATGCACGTAGCTTGCTAGAGGAGTGGCATAAGAAGGTTGAGGAATTAGAAAAGAGGGTTGAAGAAGCAAACAAGCTGGAGAGATCTGCATCAGAATCTTTGGAATCTGTAATGAAACAGCTAGAAGGAAACAATGATTTGTTGCATGAAGCAGAATCTGAAGTTTCTACTCTTAAAGAGAAGGTGGGATTATTAGAAATGACAATTGGGAGACAGAAAGCACATGTTGAGGATTCAGAACGCCAACTTCTTGTGGCTAAGGAAGAAAATATTGAAATGTCAAAGGAAGTTGAGTCTCTGAAATCTGAACTTGAGAAGGTTAAGGATGAGAAAGCCCAGGCTTTGAACAATGAAAAGCTTGCAGCTTCTAGTGTGCAGGCCCTATTAGAAGAGAAAAACAAACTTATCAGTGAATTGGAGAATTCTAGGGATGAAGAAGAAAAGAGTAAAAAGGCAATGGAAAGCTTAGCTTCTGCATTACATGAAGTATCCGCAGAAGCTAGAGAAGCCAAAGAAAATCAACTAAATATCCGAGCTGAACGTGAAAGCTATGAGGCCCAGATTGAAGATTTAAAGTTAGTCCTAAAAGCCACTAATGAAAAATACGAGTCCATGCTTGATGAGGCTAGGCATGAGATTGATGTTCTTGTATGTAGTATTGAAAATTCTAAGAGTGCCTTTGAGAACTCTAAGGTTGAGTGGGAGCAGAGAGACCTTCAACTAGTCAGCTGCATAAAGAAAAATGAAGAAGACAAGGTGTCTCTGGAAAAAGAAATAAAAAGATTGCTTTATATGCTTAAAGAAACTGAGGAAGAGGCTAATGTCAACAGGGAGGAAGAAGTTCAGTTGAAGGAAAATCTGAAGGAAGTTGAGGCTGAGGCAATCCAACTGCAAGAAGCTCTTAAGGAAGCAACAGCTGAGAATATGAAATTGAAGGAGAATTTATTGGATAAAGAAAATGAGTTGCAGAGTATGTTTCAAGAAAACGATGAACTTCGAATTAAGGAAGCTGAATCTGTCAAGAAGGTGGAGGAGTTATCTAAGTTGCTGGAAGAAGCTACAACCAGAAACCACACTGAGGAAAATGGGGATCTTACTGACAGTGAGAAGGACTATGATTTGCTTCCTAAAGTAGTTGAATTTTCTGAAGAGAATGGACATGTAGGAGAGGATATTTCAAAGGTAGAGCTTTCAGTGAATCGGGAGGAACCCAAAGAAAGCTTACAGGAAGAAAGTATTCTCCTGAACGATAAGGCTGAAAAAATTGAATCTCCCAAATCTGAGGATGCGAGTGGGAAACTGAAAGAAGATGAGAGCAAAGAAAAGGATGATTCCGTAGAAGTTGAATATAAAATGTGGGAGAGCTGCAAGATAGAGAAAAAGGAGTTCTCACCGGAGAGAGAAGCAGAGCCTGAATCATTTGAAGAGGAAGTTGAGTCAAAGATAGAAGAAGGTGGTGAGAGCTTTGATAAGATAAATGGAAGTGCTATAACAGAGAACATTGATGAGGGTGGTAGCCCTCCATCAAAACAACAACAATTGAAGAAGAAGAAGAAGCCTTTGCTAGGAAAGTTCGGAAGTCTGCTCAAGAAAAAAAGTACTAACAACCAGAAATAG 2532 0.4021 MASKSRPNLSENPNKASMATPRGSKGSRVVSKSESDSPSPLQNSRLSVERSPRSVNSKPTIERKSPRPTSTPTDKQPPRVVKSSELQSQLNLAQEDLKKAKEQLIQAEKEKLKAIDELKEAQRVVEEANEKLREALVAQKRAEENSEIEKFRAVELEQAGIETVKKKEEEWKKEIESVRNQHALDMAALLSTTEELERVKQELTMTCDAKNQALSHADDATKIAEIHAEKAEFFSAELMRLKGLLDSKLETEATENEHILKLKTEIEALKEELEKAKGYDEKLSEKEAFIEQLNVELEASKMAESYARSLLEEWHKKVEELEKRVEEANKLERSASESLESVMKQLEGNNDLLHEAESEVSTLKEKVGLLEMTIGRQKAHVEDSERQLLVAKEENIEMSKEVESLKSELEKVKDEKAQALNNEKLAASSVQALLEEKNKLISELENSRDEEEKSKKAMESLASALHEVSAEAREAKENQLNIRAERESYEAQIEDLKLVLKATNEKYESMLDEARHEIDVLVCSIENSKSAFENSKVEWEQRDLQLVSCIKKNEEDKVSLEKEIKRLLYMLKETEEEANVNREEEVQLKENLKEVEAEAIQLQEALKEATAENMKLKENLLDKENELQSMFQENDELRIKEAESVKKVEELSKLLEEATTRNHTEENGDLTDSEKDYDLLPKVVEFSEENGHVGEDISKVELSVNREEPKESLQEESILLNDKAEKIESPKSEDASGKLKEDESKEKDDSVEVEYKMWESCKIEKKEFSPEREAEPESFEEEVESKIEEGGESFDKINGSAITENIDEGGSPPSKQQQLKKKKKPLLGKFGSLLKKKSTNNQK 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00178 843 Coils Coil 381 422 - -
Cca04g00178 843 MobiDBLite consensus disorder prediction 1 67 - -
Cca04g00178 843 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 11 840 - -
Cca04g00178 843 Coils Coil 311 373 - -
Cca04g00178 843 Coils Coil 252 286 - -
Cca04g00178 843 Coils Coil 83 149 - -
Cca04g00178 843 MobiDBLite consensus disorder prediction 657 676 - -
Cca04g00178 843 Coils Coil 550 640 - -
Cca04g00178 843 MobiDBLite consensus disorder prediction 798 816 - -
Cca04g00178 843 MobiDBLite consensus disorder prediction 681 843 - -
Cca04g00178 843 Coils Coil 427 517 - -
Cca04g00178 843 MobiDBLite consensus disorder prediction 681 773 - -
Cca04g00178 843 Pfam Weak chloroplast movement under blue light 82 633 IPR008545 -
Cca04g00178 843 PANTHER WEB FAMILY PROTEIN-RELATED 11 840 - -
Cca04g00178 843 MobiDBLite consensus disorder prediction 1 86 - -
Cca04g00178 843 Coils Coil 161 181 - -
Cca04g00178 843 MobiDBLite consensus disorder prediction 774 788 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00178 Cca-Chr4 1640744 1645065 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00178 - - gmx:100777446 1273.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00178 04 1640744 1645065 Cca04g00178 04 1640744 1645065 ECH