Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00175 ATGTCTCTGTCTCTTGTTCGTATCTACTCTTCGCCTCATCTCTCAACCTCTCTTCCCCTTCCCCCTTCTTTCCGCCCTCCCCATTTTCTCATATGCCGCCGCAGCCTCGCCTCCCTTTCCCTACGATGTGGGCTTCCAACCCCTCACACTTCTTACGACGACGAAGACGAAGAAGAAGCCCCTCTTAGCTCCCTCGTTTTGCCTGAAAGATGGGACGTCTTGGGTCTTGGTCAAGCTATGGTAGACTTCTCTGGCACAGTTGATGATAATTTCCTGAAGAATTTGGGGTTGGAGAAGGGAACGCGGAAAGTAGTGAATCACGAGGAAAGAGGCAGAGTTTTGCAGGCTATGGATGGGTGCAGCTACAAAGCTGCGGCGGGTGGATCCCTTTCGAATAGCTTAGTTGCTCTGGCAAGGCTTGGAACTCCTGCTATTCATGTCGCAATGACTGGCAGTGTTGGGAGTGATCCATTGGGTGGCTTCTACAGGGAAAAACTACGCCGAGCAAATGTGCAATTTCTTTCCTCACCTATCAAGGATGGGACAACTGGAACAGTTATAGTTCTCACAACTCCAGATGCCCAGCGCACAATGCTTGCATATCAGGGCACGTCTTCAACTGTTAACTATGACACATCCTTGGCTAGTGCAGTTTCCAAGACTAACATACTTGTCGTTGAAGGTTATCTGTTTGAACTTCCTGATACTATTAAAACAATAACTAAAGCATGTGAGAAAGCACGGAGAAATGGTGCCTTGGTTGCAATAACAGCTTCAGATGTCTCCTGCATTGAGAGACACTTTGATGATTTCTGGGAAACTATTGGGAACTGTGTGGATTTAGTGTTTGCAAATGGTGATGAGGCCAAAGCTCTTTGTAACTTTGAATCAAAGGAAAGTGCTGCTTCAGCTGCAAGGTATCTGAGCCACTTTGTTCCTCTAGTATCCGTCACAGATGGTCCTAAAGGGTCTTACATAGGTGTAAAAGGAGAAGCTGTATATATCCCTCCTTCTCCATGTGTTCCAGTAGATACATGTGGTGCTGGGGATGCTTATGCATCTGGCATACTCTATGGTCTCTTAAGAGGCATATCAGATTTGAGAAGTATAGGAACATTAGCATCTAAGGTTGCTGCCACTGTTGTTGGACAACAGGGAACTCGGCTAAGAATTTCTGATGcagtccaattggctgaatcttttgcatttcaacttgattcctcctctgttggcactgATCATATTTCCAGCGTCTAA 1257 0.4423 MSLSLVRIYSSPHLSTSLPLPPSFRPPHFLICRRSLASLSLRCGLPTPHTSYDDEDEEEAPLSSLVLPERWDVLGLGQAMVDFSGTVDDNFLKNLGLEKGTRKVVNHEERGRVLQAMDGCSYKAAAGGSLSNSLVALARLGTPAIHVAMTGSVGSDPLGGFYREKLRRANVQFLSSPIKDGTTGTVIVLTTPDAQRTMLAYQGTSSTVNYDTSLASAVSKTNILVVEGYLFELPDTIKTITKACEKARRNGALVAITASDVSCIERHFDDFWETIGNCVDLVFANGDEAKALCNFESKESAASAARYLSHFVPLVSVTDGPKGSYIGVKGEAVYIPPSPCVPVDTCGAGDAYASGILYGLLRGISDLRSIGTLASKVAATVVGQQGTRLRISDAVQLAESFAFQLDSSSVGTDHISSV 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00175 418 Gene3D - 74 386 IPR029056 -
Cca04g00175 418 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 344 357 IPR002173 GO:0016773
Cca04g00175 418 Gene3D - 80 201 - -
Cca04g00175 418 PANTHER HEXOKINASE FAMILY MEMBER 53 411 - -
Cca04g00175 418 CDD adenosine_kinase 70 390 - -
Cca04g00175 418 SUPERFAMILY Ribokinase-like 70 390 IPR029056 -
Cca04g00175 418 PRINTS Ribokinase signature 122 141 IPR002139 GO:0016301
Cca04g00175 418 PRINTS Ribokinase signature 274 289 IPR002139 GO:0016301
Cca04g00175 418 PRINTS Ribokinase signature 315 326 IPR002139 GO:0016301
Cca04g00175 418 Pfam pfkB family carbohydrate kinase 122 389 IPR011611 -
Cca04g00175 418 PANTHER KINASE, PUTATIVE, EXPRESSED-RELATED 53 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00175 Cca-Chr4 1612508 1616648 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00175 - - gmx:100809829 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00175 04 1612508 1616648 Cca04g00175 04 1612508 1616648 ECH