Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00170 ATGAATTTCAACAACGTGAAGGTCCCAAAGGTTCCTGGTGGCGGAGTCTCTGCTTTGCTTAAAGTTGGCATTCTTGGTGGCCTTGCTGTGTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAACCGTGTCATCGGTGTTAAAGACAAGGTCTATCCTGAAGGGACACATATTATGATTCCTTGGTTCGAGAGGCCTGTGATCTATGACGTTCGTGCACGACCTCATTTAGTAGAGAGTACATCAGGGAGCCGTGATCTCCAGATGGTGAAAATTGGACTTAGAGTCCTTACCCGCCCTGTTCCTGACCAATTACCGACAGTGTATCGAACCCTTGGCGAAAATTATAATGAGAGGGTCCTGCCTTCTATTATACATGAAACTCTCAAAGCTGTAGTTGCACAGTATAATGCCAGTCAGCTCATTACTCAGAGAGAGGCTGTTAGTAGAGAAATAAGGAAGATATTGACTGAGAGGGCTTCCCAGTTTAACATTGCTTTGGATGATGTGTCAATCACAAGTTTGACTTTTGGGAGGGAATTTACAGCTGCAATTGAAGCCAAGCAGGTTGCTGCTCAAGAAGCTGAGAGGGCTAAATTTGTTGTTGAAAAAGCTGAACAAGACAAACGAAGTGCTGTTATTAGAGCTCAGGGTGAAGCCAAGAGTGCCCAGTTGATTGGTCAAGCTATTGCCAATAATCCTGCATTTATCACCTTAAGGAAAATTGAAGCTGCAAGGGAAATTGCTCAAACTATTTCAAATTCTGCCAACAAGGTTTACTTGAATTCAGATGATCTCTTACTGAATCTTCAGCAGTTAAATTTGGAGCCCAGTGGGAAGAGATAG 870 0.4379 MNFNNVKVPKVPGGGVSALLKVGILGGLAVYGAANSLYNVEGGHRAIVFNRVIGVKDKVYPEGTHIMIPWFERPVIYDVRARPHLVESTSGSRDLQMVKIGLRVLTRPVPDQLPTVYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQREAVSREIRKILTERASQFNIALDDVSITSLTFGREFTAAIEAKQVAAQEAERAKFVVEKAEQDKRSAVIRAQGEAKSAQLIGQAIANNPAFITLRKIEAAREIAQTISNSANKVYLNSDDLLLNLQQLNLEPSGKR 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00170 289 CDD SPFH_prohibitin 37 231 IPR000163 GO:0016020
Cca04g00170 289 Coils Coil 196 216 - -
Cca04g00170 289 SUPERFAMILY Band 7/SPFH domain 68 204 IPR036013 -
Cca04g00170 289 Gene3D Band 7 domain 65 199 IPR036013 -
Cca04g00170 289 Pfam SPFH domain / Band 7 family 39 214 IPR001107 -
Cca04g00170 289 PRINTS Prohibitin signature 80 96 IPR000163 GO:0016020
Cca04g00170 289 PRINTS Prohibitin signature 98 117 IPR000163 GO:0016020
Cca04g00170 289 PRINTS Prohibitin signature 121 139 IPR000163 GO:0016020
Cca04g00170 289 PRINTS Prohibitin signature 144 160 IPR000163 GO:0016020
Cca04g00170 289 PRINTS Prohibitin signature 167 186 IPR000163 GO:0016020
Cca04g00170 289 PRINTS Prohibitin signature 192 215 IPR000163 GO:0016020
Cca04g00170 289 PRINTS Prohibitin signature 215 231 IPR000163 GO:0016020
Cca04g00170 289 PANTHER PROHIBITIN 1 286 IPR000163 GO:0016020
Cca04g00170 289 SMART PHB_4 36 197 IPR001107 -
Cca04g00170 289 PANTHER PROHIBITIN-1, MITOCHONDRIAL-LIKE 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00170 Cca-Chr4 1572075 1575060 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00170 K17081 - gmx:100811958 522.702