Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00161 ATGGGAATTGTCGGCTTTGAAATTAACGGGAATCCTGCTTCGGCTTCTGCTTTGCATTATGGTGTTAACTCGTTCTCTTCCTATGCGGTTCCTATTTCTCTGAGACCCTTTTTTGGGAACGCTTTGAACGCCAGGAAGATTCGGGTCTCTAATTCTCGAAAGCCGAATTTCGGGGCAGTTACTGCTTCACTGAATGGTGGCTCCAATGCTGGGTTGATTAGTGACCCGCTTCTTCCCACGGACTCAGAATTCAAGCCATCCTTCGACGAGTATTTGAAGGCTATGAAATCTGCCAAAACTTTCAGAGGCAACAAGCCTGCTTCCACTGCTCAAAAACAGAAGACGATGGAAAAGGGTGATGGAAGGAGCAACACCAAAAAAATTGATAGTGTTGGTAAGAAAATTTATAGAAAAGATGGGCTTGTTGGTGCAAAAGAAGATGGGGCATTAAAAGTTGATGGAGCTGTTGTGTACAGAGAAGGTTCCTCCAGAAGTAGTGGTAAGGTCAGAAGAACACCAATTAAAGGATTTAGAAGTGAAAATGTAAGGAAAGGAAACAACTTTGATGTGAAGGCAGAGCAAAAAAATGGGTCGTTGAAACGCCGGAGTCGTAGTTTAGAACCAGAGTTTGATGATCGCAGGGGGATTGAGAATCAAGACAAAAGTGGAAGTGGAAGGACGAGTAAGAGCATAATTAGGTCTGGTTTTAATGGTAGCCATGGGGGTATCAAAGAGAGAGGAGTTACTCATGATTTATATTCTTCAAAGACTTGGGGGGAAAAGGTTGTTGATAACAGACAAAGGGATTACAACACACAGGGTAAATTCCCTGATGGAGATAAAATTGTAGCTAGACAAGAAGTTAAGGATATAGGATTTGGTAGAAGAAATACTGAAAACGGAAGTTTGATAAATAGAAATGGACTGTCAAATGTCAAATTGAATGGAAGCCGTAAGCGTTTCATTGATAGGGGTTATGATTCTGACAACTTGGAGATGGACCGAGCAGCATTTGAGAATCTTGATGACCCAAAAAGGGTTATCAAAAAGTTGCAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAAATTGTTAAATGGTGCAGATATCAATTTACCTGAATGGATATTTTCTAAGACAATGAGAAGTGCAAGGATTAAATTTTGCGACTATTCCATAACAAGGGTTATCATAATCTTGGGAAAACTAGGAAACTGGCGGCGAGTGATACAGGTCATCGAATGGCTTCAAAAGCGTGAACGTTTTAAGTCCCACAAGCTAAGGCATATATATACAGCTGCTCTTGATGCACTTGGAAAGTCAAGGAGACCTGTAGAGGCACTAAATATATTTCATGCAATGCAGCAACATATGTCCTCATATCCTGATTTAGTAGCTTATCATAGTATTGCTGTTACTCTTGGACAAGCAGGGCACATGAAGGAACTCTTTGATGTAATTGATATTATGCGGTCACCACCTAAGAAGAAGTTCAAAACAGGGGTACTGGAGAACTGGGACCCAAGGCTGGAACCTGATATTGTAGTTTATCATGCAGTCCTTAATGCTTGTGTTAGGCGGAAACAATGGGAAGGGGCCTTTTGGGTTTTACAGCAGTTAAAGGAGAAAGGACAACAACCTTCTGCTACGACTTATGGCCTAGTTATGGAGGTGATGTTTTCATGTGGCAAGTATAACTTGGTTCATGAATTTTTCAGAAAGCTTCAGAAGTCTTTCATTCCCAATTCATTGACATATAGAGTTCTTGTAAATACACTTTGGAAAGAGGGAAAAACTGATGAGGCTATATTGGCTGTCCAAGAAATGGAAATACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGATCTAGCTCGATGTCTCTGTGCAGCTGGAAGAAGCCATGAGGCACTAAAGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCATTGGTAGTTACCTACACTGGCTTGATGCAAGCAAGTTTAGACTCTGGAAACATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAATTTGTACTCCAAATCTGGTTACTTGTAACATAATGCTGAAAGCTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGTTGTTTGAGCAGATGTCAGAAAATGCAAATCATTTGAGGAGAAATAGTGATTACAAAATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTGCAGAGAAGAGATGGGATTATTTTGATGATGTCTATCAAAGGATGCTGTACCGTGGTTATCACTTCAATCCAAAACGTCACCTTCGAATGATATTGGAGGCTTCAAAAGCTGGAAAGGAACGGCCTTTGGAGATAACATGGAAGCACTTAACCGATACAGATCGCATTCCATCAGCTCCTCTGATCAAGGAAAGGTTCTGTGCAAAGCTTGAGAAAGATGACTATGTTGCTGCTCTCACATGTATTACCAACAACCCCCCACAAGATTTGCAGCCATTTTCCAAGTCGTCTTGGTTGAATCTATTCAAAGAAAATTCTCAACGGTTTCAGACGGACACGATTGTTAGACTAATGAATGAGGCTAGCAATATAGTTTCCAATAGTAGTTTGCCGAATCCAACACTTgagtatttaatgcaatcatgcaaagaatttttgtttgccactgatctcagtgcagctGACACGGATTCACTGAAAAATGTATTTACTGTAGAAAGTCAGCTGGTAATAGCCAATTCTAGATGA 2775 0.3957 MGIVGFEINGNPASASALHYGVNSFSSYAVPISLRPFFGNALNARKIRVSNSRKPNFGAVTASLNGGSNAGLISDPLLPTDSEFKPSFDEYLKAMKSAKTFRGNKPASTAQKQKTMEKGDGRSNTKKIDSVGKKIYRKDGLVGAKEDGALKVDGAVVYREGSSRSSGKVRRTPIKGFRSENVRKGNNFDVKAEQKNGSLKRRSRSLEPEFDDRRGIENQDKSGSGRTSKSIIRSGFNGSHGGIKERGVTHDLYSSKTWGEKVVDNRQRDYNTQGKFPDGDKIVARQEVKDIGFGRRNTENGSLINRNGLSNVKLNGSRKRFIDRGYDSDNLEMDRAAFENLDDPKRVIKKLQFSHKEMEEKIQKLAKLLNGADINLPEWIFSKTMRSARIKFCDYSITRVIIILGKLGNWRRVIQVIEWLQKRERFKSHKLRHIYTAALDALGKSRRPVEALNIFHAMQQHMSSYPDLVAYHSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGVLENWDPRLEPDIVVYHAVLNACVRRKQWEGAFWVLQQLKEKGQQPSATTYGLVMEVMFSCGKYNLVHEFFRKLQKSFIPNSLTYRVLVNTLWKEGKTDEAILAVQEMEIRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEICTPNLVTCNIMLKAYLEHGMFQEAKALFEQMSENANHLRRNSDYKMLVVPDTYTFNTMLDACVAEKRWDYFDDVYQRMLYRGYHFNPKRHLRMILEASKAGKERPLEITWKHLTDTDRIPSAPLIKERFCAKLEKDDYVAALTCITNNPPQDLQPFSKSSWLNLFKENSQRFQTDTIVRLMNEASNIVSNSSLPNPTLEYLMQSCKEFLFATDLSAADTDSLKNVFTVESQLVIANSR 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00161 924 MobiDBLite consensus disorder prediction 159 243 - -
Cca04g00161 924 Gene3D Tetratricopeptide repeat domain 356 505 IPR011990 GO:0005515
Cca04g00161 924 Gene3D Tetratricopeptide repeat domain 506 607 IPR011990 GO:0005515
Cca04g00161 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 586 620 IPR002885 -
Cca04g00161 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 690 724 IPR002885 -
Cca04g00161 924 Pfam Pentatricopeptide repeat domain 656 701 IPR002885 -
Cca04g00161 924 Pfam Pentatricopeptide repeat domain 514 563 IPR002885 -
Cca04g00161 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 737 771 IPR002885 -
Cca04g00161 924 SUPERFAMILY TPR-like 509 720 IPR011990 GO:0005515
Cca04g00161 924 MobiDBLite consensus disorder prediction 173 220 - -
Cca04g00161 924 Coils Coil 348 375 - -
Cca04g00161 924 Coils Coil 707 727 - -
Cca04g00161 924 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Cca04g00161 924 MobiDBLite consensus disorder prediction 221 235 - -
Cca04g00161 924 Pfam PPR repeat 739 768 IPR002885 -
Cca04g00161 924 Pfam PPR repeat 589 618 IPR002885 -
Cca04g00161 924 Pfam PPR repeat 434 460 IPR002885 -
Cca04g00161 924 PANTHER OS01G0674700 PROTEIN 18 901 - -
Cca04g00161 924 TIGRFAM PPR: pentatricopeptide repeat domain 434 467 IPR002885 -
Cca04g00161 924 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Cca04g00161 924 TIGRFAM PPR: pentatricopeptide repeat domain 692 720 IPR002885 -
Cca04g00161 924 TIGRFAM PPR: pentatricopeptide repeat domain 739 765 IPR002885 -
Cca04g00161 924 MobiDBLite consensus disorder prediction 102 126 - -
Cca04g00161 924 Gene3D Tetratricopeptide repeat domain 639 802 IPR011990 GO:0005515
Cca04g00161 924 PANTHER OS01G0674700 PROTEIN 18 901 IPR044645 GO:0009658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00161 Cca-Chr4 1472705 1480775 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00161 537 787 Glycosyltransferase AT1G05670 21.961 2.27e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00161 - - aprc:113864568 1447.18