Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00158 ATGAGTTCGACTAATGAGAATGCAGTGAAGCCCTTCAAGATCTTCGTGGGCTATGATACACGTGAAGACATTGCCTTTCAGGTTTGTCGCCACTCCCTCTTGAAGAAATCTTCGATCCCCCTTGAGATCATACCAATCAAGCAATCAGAGCTGAGAGAAAACGGCTTGTATTGGCGTGAAAAGGACCGATATGAGAGCACCGAGTTCTCCTTTTCAAGATTTTTGACTCCACGTTTGGCCAACTTCGAGGGTTGGGCAATGTTTGTGGATTGTGACTTCCTCTACTTAGCAGATATTAAGGAGCTGAGCGACTTGATTGACGACAAGTACGCTATCATGTGTGTTCAACATGACTATGCTCCAAAGGAGACCACAAAAATGGATGGGGCAGTGCAAACTTTGTACCCCAGAAAGAATTGGTCTTCTATGGTGTTGTATAATTGTGGCCATCCCAAGAACCGTGATCTCACTGCTGACACTGTGAACTCACAAACCGGTGCTTTCTTACACAGGTTTCAGTGGCTCCAAGATGATGAAATTGGGTCCATTCCTTTTGTTTGGAACTTCCTTGAGGGGCACAACAAGGTTGTTGAGAGTGACCCTAGTACTTTCCCTAAGGCTGTTCATTATACTCGTGGAGGGCCATGGTTTGAAGCATGGAAGAACTGTGAATTTGCTGATCTTTGGCTGAATGAAAGGGATGAGTACCTGAATGAGGCCAAAAAGGCAATTACAAATTAG 741 0.448 MSSTNENAVKPFKIFVGYDTREDIAFQVCRHSLLKKSSIPLEIIPIKQSELRENGLYWREKDRYESTEFSFSRFLTPRLANFEGWAMFVDCDFLYLADIKELSDLIDDKYAIMCVQHDYAPKETTKMDGAVQTLYPRKNWSSMVLYNCGHPKNRDLTADTVNSQTGAFLHRFQWLQDDEIGSIPFVWNFLEGHNKVVESDPSTFPKAVHYTRGGPWFEAWKNCEFADLWLNERDEYLNEAKKAITN 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00158 246 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 242 IPR029044 -
Cca04g00158 246 PANTHER - 5 244 - -
Cca04g00158 246 SUPERFAMILY Nucleotide-diphospho-sugar transferases 14 236 IPR029044 -
Cca04g00158 246 PANTHER EXPRESSED PROTEIN 5 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00158 Cca-Chr4 1448195 1450020 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00158 - - gmx:100780640 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00158 04 1448195 1450020 Cca04g00158 04 1448195 1450020 ECH