Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00152 ATGATGGCTGTTGAGACTTCCGATAAACCTAATGTACCACGTGATTTTGATGATGATGAGGATGGGATAATTTTCAAAAGATACACATCTAAGAAAAATCAGTTGCATTCAGAAGCAAGGAGGTCAAGTTGTCACAGTCATGATGGACAGAATTCTAATGCACCTTCTTCGAATGGCCAAACTTCTAGCGTGCAGAAAGGTAATACTGTCCTATGTGCTAAGCCATCGTCCATGAAACCTTCTCTAGGTATCTCAAAAGCTTCAAATTCTCTTGTCAACTCCTCCTCTGTGAAGCTGCCTGTAGCAAATTCAAAATCACCTTCATTGGGAGAAAAAACAAAGCCTCTTTTGGAACAGAAAATGCCCATTGACGTTAAGGAGGAACCAAAATCTATCGAACATTCTGCTAAAGTTGATTTTGAAGATTCAGAAGATGATGAGGATAATAAGCCGTTGAGTTTTAGGTTGATAAACTCTAACCATGATAAGAAAGCAACCCCTGCTGTTGTCAAGAAATCTTCTGAAGACTCTGATGATGATGATGTCCCTTTGGCAAAAAAGATACTCCGTAATTCCATTTTGGGAACAACTAGCAGTAACCACGATGACTCTGATCAGAAAAAGCCTATCATGAAAATTCAGAAAGATCGGCAAAATGGTTCTGGCACGAGTAATAAACAGGATAAGCCATCTTCATTGCCAGCTAAGAGACCATTAGATAATAGTAATTCCTTGCACCCCTCTGTTAAGAAGCCAAAGGTCTCAGATCCAGCTGCATCTATAAAAAAAAAGCCAATCCCTGTGAAACATGAGCTGAAGGCAGAGGAGGATGATGATGATGACATTCCTATTTCCCAGAGATTAAAGAAATCATCCATGTCGGGTGATAAATCATCTTCCACTAAGAAGGTGTTGTCAAAGGTCAATAAAGTTAACAAGTCTGGCTCAAAACCTTTTAAGAAACAGGCCAAGAAGACGTTTAAAAAAGCAGGCAAAGATTCAGAATACTCCAAATCTACTAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTTCCTCCTCCATACCAGCCACATGGGGTAAAGATGCTCTTCAAGGGGAGACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACAATGTATGCAGTCATGCGAGATACAGAGTACATGCAGAAAGATAGGTTCAAGGAAAATTTCTGGAATGACTGGCGGAAGTTGCTTGGAAGAAATCATATAATCCAGAACTTGAAAGATTGTGATTTTACTCCAATCTATGATTGGTACCAAAGTGAGAAGGAAAAGAAGAAACAAATGACTACAGAAGAGAAGAAGACTTTAAAGGAAGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATTGTTGATGGTGTTAAAGAAAAGGTTGGGAATTTTAGGGTTGAACCACCAGGATTGTTCCGAGGCAGAGGAGAGCACCCCAAGATGGGAAAATTGAAAAAACGCATTCATCCAAGTGATATCACAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGTGAAAGGTGGAAGGAGATAAGACATGACAATACAGTTACATGGTTAGCCTTTTGGAATGACCCTATCAATCCAAAGTTATTCAAGTATGTGTTTTTGGCTGCTAGTAGTTCCTTGAAGGGGCAAAGTGACAAGGAAAAGTATGAGAAAGCCAGGATGTTAAAGGATTATATTGCGAATATTAGGTCTGCATACACAAAAAATTTTACCAGTAAAGATATTACGAAGCAGCAAATTGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGTTGCTGCACATTAAAAGTAGAGAATGTGACAAGAGAACCCCCCAACAAACTGAAGTTTAACTTCCTTGGTAAAGATTCTATCAGGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTATATAATGCAATTTTTAAGTTCCAGAAAGATAAAGGCCCTGGTGATGATCTTTTTGATATGTTGGATACAAGTAAATTAAATGCTCATCTGAAGGAACTCATGCCTGGTTTAACAGCAAAAGTCTTCCGTACATTCAATGCATCAATCACATTGGATGATATGTTGAATAAGGAAACTAAAGATGGAGATGTTGGGGAAAAAATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCTATCATTTGTAATCATCAACGTAGTGTTTCAAAATCTCATGGTGCACAAATGTCAAAGTTAAATGAAAAAATTGATGAACTTCAGGCTGTTTTGAAGGAGCTGAAAACGGATTTAGACAGGGCAAGGAAAGGAAAGCCCCCTTCAAAGAGTTCAGATGGAAAGAGAAAAAAGAGCTTAACTCCTGAAGCGCTAGAGAAAAAGATATCTCAAACCAATGCAAAAATTGAGAAAATGCAACGTGATATGAAGACAAAAGAAGATCTGAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCCAGGATTACGGTTGCCTGGTGCAAGCGGCACGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTTCTGGCGAAATTCTGTTGGGCAATGGATGTAGATCCCGATTTCAGATTCTGA 2688 0.3891 MMAVETSDKPNVPRDFDDDEDGIIFKRYTSKKNQLHSEARRSSCHSHDGQNSNAPSSNGQTSSVQKGNTVLCAKPSSMKPSLGISKASNSLVNSSSVKLPVANSKSPSLGEKTKPLLEQKMPIDVKEEPKSIEHSAKVDFEDSEDDEDNKPLSFRLINSNHDKKATPAVVKKSSEDSDDDDVPLAKKILRNSILGTTSSNHDDSDQKKPIMKIQKDRQNGSGTSNKQDKPSSLPAKRPLDNSNSLHPSVKKPKVSDPAASIKKKPIPVKHELKAEEDDDDDIPISQRLKKSSMSGDKSSSTKKVLSKVNKVNKSGSKPFKKQAKKTFKKAGKDSEYSKSTKLLPSSGDGQKKWTTLVHNGVIFPPPYQPHGVKMLFKGRPVDLTPEQEEVATMYAVMRDTEYMQKDRFKENFWNDWRKLLGRNHIIQNLKDCDFTPIYDWYQSEKEKKKQMTTEEKKTLKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIHPSDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLAFWNDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIANIRSAYTKNFTSKDITKQQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVTREPPNKLKFNFLGKDSIRYENTVEVELPVYNAIFKFQKDKGPGDDLFDMLDTSKLNAHLKELMPGLTAKVFRTFNASITLDDMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHGAQMSKLNEKIDELQAVLKELKTDLDRARKGKPPSKSSDGKRKKSLTPEALEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00152 895 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 350 565 IPR036202 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Cca04g00152 895 CDD Topo_IB_C 572 765 IPR013500 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 ProSitePatterns Eukaryotic DNA topoisomerase I active site. 841 859 IPR018521 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 Gene3D Topoisomerase I; Chain A, domain 3 566 714 IPR014711 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 MobiDBLite consensus disorder prediction 10 45 - -
Cca04g00152 895 Gene3D - 368 451 IPR013034 GO:0003917|GO:0006265
Cca04g00152 895 MobiDBLite consensus disorder prediction 1 343 - -
Cca04g00152 895 Coils Coil 771 798 - -
Cca04g00152 895 MobiDBLite consensus disorder prediction 287 316 - -
Cca04g00152 895 Gene3D - 715 895 IPR014727 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Cca04g00152 895 CDD Topoisomer_IB_N 352 564 - -
Cca04g00152 895 PRINTS Eukaryotic DNA topoisomerase I signature 492 501 IPR001631 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 PRINTS Eukaryotic DNA topoisomerase I signature 608 627 IPR001631 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 PRINTS Eukaryotic DNA topoisomerase I signature 631 645 IPR001631 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 PRINTS Eukaryotic DNA topoisomerase I signature 653 669 IPR001631 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 PRINTS Eukaryotic DNA topoisomerase I signature 711 725 IPR001631 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 PRINTS Eukaryotic DNA topoisomerase I signature 848 859 IPR001631 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 PANTHER DNA TOPOISOMERASE I 121 895 - -
Cca04g00152 895 MobiDBLite consensus disorder prediction 216 249 - -
Cca04g00152 895 Pfam Eukaryotic DNA topoisomerase I, catalytic core 566 791 IPR013500 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 MobiDBLite consensus disorder prediction 790 822 - -
Cca04g00152 895 MobiDBLite consensus disorder prediction 46 110 - -
Cca04g00152 895 SUPERFAMILY DNA breaking-rejoining enzymes 566 892 IPR011010 GO:0003677
Cca04g00152 895 Coils Coil 442 469 - -
Cca04g00152 895 Pfam C-terminal topoisomerase domain 827 895 IPR025834 -
Cca04g00152 895 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 352 563 IPR008336 GO:0003677|GO:0003917|GO:0006265
Cca04g00152 895 MobiDBLite consensus disorder prediction 117 139 - -
Cca04g00152 895 PANTHER DNA TOPOISOMERASE I 121 895 - -
Cca04g00152 895 SMART topeu 492 868 IPR013499 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Cca04g00152 895 Gene3D DNA Topoisomerase I, domain 2 348 563 IPR013030 GO:0003677|GO:0003917|GO:0005694|GO:0006265
Cca04g00152 895 Coils Coil 822 842 - -
Cca04g00152 895 MobiDBLite consensus disorder prediction 263 286 - -
Cca04g00152 895 MobiDBLite consensus disorder prediction 165 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00152 Cca-Chr4 1381818 1389999 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00152 K03163 - gmx:100799837 1459.51