Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00150 ATGGTAAATGGTAATCATACACAGTGGCTAGGAAGGAATATAATGGCTACTGCTGCAGTTATTGGACTGAGTGGAGGAAAGAGGCTCTTGAGCTCATCATATCATTACTCTGATATTATAGAAAAGCTTTCTTGTGGCAGTGATTTTGGATCCACACACTATCAGATTGCTCCTACAAAATCTGTGATAGTTTCTAAGAAATCATCCAACTACACTTCTACTTTTCCAGCATCCAACAGGCAGAATGAGTCCATTAAGGCTCTTAAGGAGCATGTTGATGGTGCCCCCACCACTGCTGATCCATGGTTTCATAGTTGCAATTCTAATGAATTGGAGGTGGAAAGTTCTGAAATGGGTTATTCTGTGGAGGCTCTTCTTTTGTTGCAGAAGTCAATGCTGGAAAAGCAATGGAACCTTTCCTTTGAGAGGGAAGTGCTAACGGAGCATTCAAGTAAAGAAAAAAACTGTAGGAAAGTGGCAGTGACTTGTTCTGGGGTGTCTGCTAGGCAAAGAAGAATGAATCTCAAGAGGAAGACTGCAGTTAAAACCGGCTCGTCAATGGTGCAACCTTGTGGTGCTGTGCAGCTGAAGTCAAAAATCAGTCCAGAGCTGCTTCAAAATCGTTTGAAGGGCTATGTGAAAGGTGTAGTGAGTGAGGAGTTGCTGTCTCATGCAGAAGTTGTAAACCTATCAGAGAAAATAAAAGTTGGGCTTTCCTTAGATGAGCACAAATCCAGACTGAAGGAAAGACTAGGATGTGAACCCTCTGAGGATCAAATTGCAACTTCATTGAAGATTTCGTGCACTGAACTACGAGAAAGAATGTTAGAGTGCTCTCTGGCAAGAGAAAAGTTGACTATGAGCAATGTTCGCTTAGTTATGTCTATTGCTCAAAGATATGATAACCTGGGTGCAGAAATGGCTGACCTTGTTCAGGGTGGCTTGATTGGACTACTGCGTGGTATTGAAAAGTTTGATTCTTCAAAAGGGTTTAAGATTTCAACTTATGTTTATTGGTGGATACGTCAGGGTGTTTCAAGAGCTTTAATTGAGAATTCAAGAACTTTAAGATTGCCTGCTCATTTGCATGAGAGATTATCTTTAATCCGCAACGCAAAGTTTAGACTAGAAGAGAGAGGCATTACTCCAACTATTGAGAGGATTGCAAAACACCTTAACATGTCTCAAAAAAAAGTTAGAAATGCTACTGAGGCAATCAGCACTGTTATCTCATTTGACAGGGAAGCATTCCCCTCTCTGAATGGTATACAAGGAGAAACTCATCATAGTTATATTGCAGATAATCGTGTTGAGAACATCCCTTGGAATGGAGTAGATGAGTGGGCCCTAAAGGATGAAGTGAACAAACTCATTAATGTGACCCTTGTGGAACGAGAGAGAGAAATTATTCGTCTTTATTATGGACTGGATAAAGAATGTCTTACGTGGGAAGACATTAGTAAACGGATAGGTTTGTCAAGAGAAAGAGTAAGGCAAGTTGGACTTGTTGCATTGGAGAAACTAAAACATGCTGCGAGGAAGAGAGAAATGGAGGCCATGCTTTTGAAACATTAA 1575 0.407 MVNGNHTQWLGRNIMATAAVIGLSGGKRLLSSSYHYSDIIEKLSCGSDFGSTHYQIAPTKSVIVSKKSSNYTSTFPASNRQNESIKALKEHVDGAPTTADPWFHSCNSNELEVESSEMGYSVEALLLLQKSMLEKQWNLSFEREVLTEHSSKEKNCRKVAVTCSGVSARQRRMNLKRKTAVKTGSSMVQPCGAVQLKSKISPELLQNRLKGYVKGVVSEELLSHAEVVNLSEKIKVGLSLDEHKSRLKERLGCEPSEDQIATSLKISCTELRERMLECSLAREKLTMSNVRLVMSIAQRYDNLGAEMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALIENSRTLRLPAHLHERLSLIRNAKFRLEERGITPTIERIAKHLNMSQKKVRNATEAISTVISFDREAFPSLNGIQGETHHSYIADNRVENIPWNGVDEWALKDEVNKLINVTLVEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00150 524 PANTHER RNA POLYMERASE SIGMA FACTOR SIGA 15 524 - -
Cca04g00150 524 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 357 413 IPR013324 -
Cca04g00150 524 PRINTS Major sigma-70 factor signature 309 322 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 PRINTS Major sigma-70 factor signature 333 341 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 PRINTS Major sigma-70 factor signature 462 474 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 PRINTS Major sigma-70 factor signature 482 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 PRINTS Major sigma-70 factor signature 497 508 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 Pfam Sigma-70 region 3 364 435 IPR007624 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 Pfam Sigma-70 region 2 288 354 IPR007627 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 Gene3D - 440 518 IPR036388 -
Cca04g00150 524 Pfam Sigma-70, region 4 461 510 IPR007630 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 281 511 IPR014284 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 Gene3D RNA Polymerase Primary Sigma Factor 67 355 - -
Cca04g00150 524 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 440 514 IPR013324 -
Cca04g00150 524 CDD Sigma70_r4 451 509 - -
Cca04g00150 524 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 208 355 IPR013325 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 15 524 - -
Cca04g00150 524 ProSitePatterns Sigma-70 factors family signature 1. 309 322 IPR000943 GO:0003700|GO:0006352|GO:0006355
Cca04g00150 524 Gene3D - 356 406 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00150 Cca-Chr4 1367353 1372351 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00150 K03086 - gmx:100801884 901.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00150 04 1367353 1372351 Cca04g00150 04 1367353 1372351 ECH