Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00149 ATGGGTTCGGCACCAGAAGTGTTGGCTCAGAGAAGTTGTGGCAAGCTCATTGGGACTCGGGTCCTACAGTACTTAAATGGAGGCCCTCTCTCCTTCAAAACCCACCAAGCCATTGTTTTGATTGTAACATTTTTTGCTTATGCTAGTTATCATGCCACTAGAAAAACTACTAGTATTGTAAAGAGTGTCCTTGATCCCCAATCAGCAGATATAGGTTTGGCCTTCTTTCCATTGAGGCCAATCAATTTCACTGTGTCAAATGGATCAAGGAGACTTTCTTCCAACCTTGGAGATGGTTGGGCACCATTTAATGGATCAGATGGCACATCCATTCTTGGTGAATTGGATGTTGCTTTTCTTGCAGTGTATGCTTTTGGGATGTACTTTTCTGGACATTTTGGTGATAGGTGTAATTTGAGGATTTTTCTAACTGTGGGGATGATAGGAACTGGCTTGTTTACTTCATTATTTGGGGTAGGGTACTGGGGAAACATCCACAACTTCTATTATTATTTAGTAGTTCAAATGATTGCTGGATTGTTTCAATCCACTGGGTGGCCTTCTGTAGTTGCTGTTGTGGGTAACTGGTTTGGGAAGAGCAAGAGAGGGTTGATCATGGGAATTTGGAATGCTCACACTTCAATTGGGAACATTGCTGGTTCTTTGATTGCTTCTGCTATGTTGAGCTATGGATGGGGTTGGTCCTTTGTTGTGCCAGGACTAATAACTGCTTTCGTTGGTTTGGTTGTTTTCCTTATATTGCCGATCACTCCCCAGTCTGTAGGAGCTGATAGAGAGGAAGATGAAGACAGTTATCCCAAGAAAAGTGGTGAAGAAATAGCAGAGCCTCTATTAAGCCAAGAAACTCCAGTTGAGGAGAAAGCAGTTGGGTTCATACAAGCATGGAAAATTCCTGGGGTTGCTCCTTTTGCTCTTTGTCTGTTTTTTGCCAAATTGGTTGCATATACGTTTCTCTATTGGCTCCCATTCTATGTTAGCCACACAGCAATTGATGGGAAATATCTATCTAGTGAGACATCAGGAACGCTATCCACTTTATTTGATGTTGGAGGGGTGCTTGGCGGAATTCTAGCTGGTCACATTTCTGATCACTTAGAGGCTAGAGCCATAACAGCAGCAAGTTTCATGTACTGTGCAATCCCAGCTCTCTTCTTCTATCGGAGTTACGGGCATGTTTCGTTGATTTTGAACGGAGTGTTGATGTTCATCACTGGCATGTTCGTGAATGGACCTTATGCTCTCATAACTACTGCAGTTTCGGCTGACCTGGGAACACATAAATCATTGAAGGGTAATTCACGAGCTCTTGCAACTGTCACGGCAATCATTGATGGAACTGGTTCTATAGGGGCTGCAGTTGGACCTTTGTTAACGGGTTACATATCTGCAAAGAGCTGGAGTGCTGTTTTCACAATGTTGATGGCAGCAGCTTTGATTGCAGGGTTGCTTTTGACCAGGCTAGTAGTGTCAGAGGTGGCCACAAAGATTGAAGAGTCAAGGTCTAATAGATCACAGGAATGTACACTCGAAGTATGA 1557 0.4329 MGSAPEVLAQRSCGKLIGTRVLQYLNGGPLSFKTHQAIVLIVTFFAYASYHATRKTTSIVKSVLDPQSADIGLAFFPLRPINFTVSNGSRRLSSNLGDGWAPFNGSDGTSILGELDVAFLAVYAFGMYFSGHFGDRCNLRIFLTVGMIGTGLFTSLFGVGYWGNIHNFYYYLVVQMIAGLFQSTGWPSVVAVVGNWFGKSKRGLIMGIWNAHTSIGNIAGSLIASAMLSYGWGWSFVVPGLITAFVGLVVFLILPITPQSVGADREEDEDSYPKKSGEEIAEPLLSQETPVEEKAVGFIQAWKIPGVAPFALCLFFAKLVAYTFLYWLPFYVSHTAIDGKYLSSETSGTLSTLFDVGGVLGGILAGHISDHLEARAITAASFMYCAIPALFFYRSYGHVSLILNGVLMFITGMFVNGPYALITTAVSADLGTHKSLKGNSRALATVTAIIDGTGSIGAAVGPLLTGYISAKSWSAVFTMLMAAALIAGLLLTRLVVSEVATKIEESRSNRSQECTLEV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00149 518 PANTHER GLYCEROL-3-PHOSPHATE TRANSPORTER 1-RELATED 1 510 - -
Cca04g00149 518 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 500 IPR020846 GO:0022857
Cca04g00149 518 Pfam Major Facilitator Superfamily 112 430 IPR011701 GO:0022857|GO:0055085
Cca04g00149 518 PANTHER MAJOR FACILITATOR SUPERFAMILY TRANSPORTER 16, ISOFORM B 1 510 - -
Cca04g00149 518 PIRSF Hexose_phosphate_transp 29 513 IPR000849 GO:0016021|GO:0022857|GO:0055085
Cca04g00149 518 Gene3D MFS general substrate transporter like domains 301 509 IPR036259 -
Cca04g00149 518 Gene3D MFS general substrate transporter like domains 30 269 IPR036259 -
Cca04g00149 518 SUPERFAMILY MFS general substrate transporter 110 495 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00149 Cca-Chr4 1356169 1362426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00149 1 514 Organic Solute Cotransporters AT3G47420 72.640 0.0 732
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00149 K13783 - gmx:100799211 954.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00149 04 1356169 1362426 Cca04g00149 04 1356169 1362426 ECH