Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00148 ATGGCGTCCTCTCTCCCTCTGAAGCGCTtcctttcctctcccatcctctccaggtctctcctcCGTCCCGCAGCGTCGGCTTCCGCTTCCCGCTCCTTCAACACCAACGCCATGCGCCACTACGACGACGACCGCGACGTCGATCGTCGATCCGAACGCTCTTCCCCTCGCACATCGCGCCGCGACGATATCTTCGCAGGTAACGCGCTGGATCCGTTTTTTCCGACTCGGAGTTTGAGCCAGGTTCTGAACATGGTGGATCAGTTCATGGACAATCCGTTCCTCTCTCCGCCGCGCGGAATCGGTGCTGGAGCCGGAGTTCGTCGCGGATGGGACGCGAGAGAGACGGAGGATGCTCTGCTTCTCCGCGTGGACATGCCTGGACTCGGGAAGGAAGACGTGAAGATCTCCGTGGAGCAGAACACTCTCACTATCAAAGGCGAAGGTGCTAAAGAAAGCGAGGACGAAGAAAGCGCTCGTCGCTACTCTAGCAGGATTGACTTGCCGGACAAGCTTTACAAGATTGACCAGATCAAGGCTGAGATGAAGAACGGCGTGCTCAAACTCGTTGTGCCTAAAATGAAGGAAAATGAGAGGAGCGATGTGATCGATGTCAAGATCGAATAG 627 0.5327 MASSLPLKRFLSSPILSRSLLRPAASASASRSFNTNAMRHYDDDRDVDRRSERSSPRTSRRDDIFAGNALDPFFPTRSLSQVLNMVDQFMDNPFLSPPRGIGAGAGVRRGWDARETEDALLLRVDMPGLGKEDVKISVEQNTLTIKGEGAKESEDEESARRYSSRIDLPDKLYKIDQIKAEMKNGVLKLVVPKMKENERSDVIDVKIE 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00148 208 Pfam Hsp20/alpha crystallin family 113 207 IPR002068 -
Cca04g00148 208 MobiDBLite consensus disorder prediction 37 60 - -
Cca04g00148 208 CDD ACD_sHsps-like 112 193 - -
Cca04g00148 208 SUPERFAMILY HSP20-like chaperones 80 199 IPR008978 -
Cca04g00148 208 MobiDBLite consensus disorder prediction 36 63 - -
Cca04g00148 208 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 208 - -
Cca04g00148 208 Gene3D - 64 207 IPR008978 -
Cca04g00148 208 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 102 208 IPR002068 -
Cca04g00148 208 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 208 IPR044656 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00148 Cca-Chr4 1352909 1354295 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00148 K13993 - gmx:547852 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00148 04 1352909 1354295 Cca04g00148 04 1352909 1354295 ECH