Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00140 ATGGCGCTTAAAACCCTATCCACTTTCCATTCACCACTTTCTCTCCCCAACCCCAAATTCCTCTCCACCAAACCATGCCTCATTCTATGCGAGTTCCCGCGCTCTCACAACTCGCGTTTACCCGCCGCCGAATCCGATGGCACCGGCGCCGCCGCTCCTTCGCCGGGCGAGAAGTTCCTCGAACGCCAGCACTCCTTCGAGGCTGCGAAGCTCATTCTCAATGagaacacgaagaagaaaaagaagaaAGACAACGCTCTGAAAGCTTCCAGAGCCGTCGCTTCATGCTACGGCTGCGGCGCTCCGTTGCACACCTCCGATGTCGACGCTCCTGGCTACGTCGATCCCGAGACCTATGAATTGAAGAAGAAGCACCGCCAGCTTAGAACCGTTCTGTGTCGGCGATGTCGGCTTTTGTCTCATGGAAAGATGATAACCGCTGTTGGAGGACACGGAGGCTACCCTGGCGGTAAAATGTTTGTTACTGCTGAAGAGCTTCGAGAAAAGTTGTCTCACTTGCGTCACGAGAAAGCGCTAATTGTCAAATTGGTTGATATTATTGACTTCAATGGAAGTTTTTTGTCTCGTGTGAGAGATCTTGCTGGTTCTAACCCAATAATACTGGTGGTGACTAAGGTCGATCTTCTTCCAAGGGATACTGATCTTAATTGTATTGGGGATTGGGTTGTAGAGGCTACCACGAGAAAGAAGCTGAATGTTCTCAGTGTCCATCTGACCAGTTCCAAATCATTGGTTGGAATAACTGGAGTGATATCAGAAATCCAAAAAGAGAAGAAGGGAAGAGATGTGTACATTCTGGGTTCAGCTAATGTTGGGAAATCTGCTTTCATCAATGCTTTACTAAAAACAATGGCTATAAATGATCCTGTGGCTGCATCTGCACAAAGGTACAAACCAATACAATCTGCAGTTCCTGGAACTACCTTAGGGCCAATTCAAATTAATGCTTTCCTAGGAGGAGGGAAATTGTATGATACTCCTGGAGTTCATCTCTACCATAGGCAAACTGCAGTTGTTCATTCTGAAGATCTACCCTCCCTTGCTCCTCAAAGCCGACTGAGGGCCCGGTCTTTCCCAAGTTCTCTAGTATCTTCAGGCAATGTAGAGGAAGAAGAGTCTTCCACAGTGAATGGCTTGAATGCTTTTTCAATATTTTGGGGAGGTCTTGTTAGAATTGATGTCGTGAAGGTTCTTCCAGAAACTTGTTTGACATTTTATGGTCCCAAGAGACTACCGATTCATATGGTGCCCACAGAGCAAGCAGAAGAATTTTATCAGAGAGAACTTGGAGTTCTGCTGACCCCGCCAAGTGGAGGAGAAAATGCTGAGAACTGGAAAGGACTTGAATCAGAACGTAAATTGCAAATAAAATTCGAAGATGTGGAAAGACCCGCTTGCGATATAGCTATATCAGGTCTAGGATGGTTTACTGTTGAGCCAGTTAGTAGGTCACTAAAAAATTCACAACCAAAGCCTGTAGACACTGCTGGGGAATTGATTTTGGCCGTGCACGTCCCTAAGCCTGTTGAGATTTTTGTGAGGCCACCAATCCCCGTGGGCAAGGCTGGAGCAGAGTGGTACCAGTATGTAGAATTAACAGAGAAAGAAGAGGAAATGAGACCAAAATGGTACTTTTGA 1659 0.4587 MALKTLSTFHSPLSLPNPKFLSTKPCLILCEFPRSHNSRLPAAESDGTGAAAPSPGEKFLERQHSFEAAKLILNENTKKKKKKDNALKASRAVASCYGCGAPLHTSDVDAPGYVDPETYELKKKHRQLRTVLCRRCRLLSHGKMITAVGGHGGYPGGKMFVTAEELREKLSHLRHEKALIVKLVDIIDFNGSFLSRVRDLAGSNPIILVVTKVDLLPRDTDLNCIGDWVVEATTRKKLNVLSVHLTSSKSLVGITGVISEIQKEKKGRDVYILGSANVGKSAFINALLKTMAINDPVAASAQRYKPIQSAVPGTTLGPIQINAFLGGGKLYDTPGVHLYHRQTAVVHSEDLPSLAPQSRLRARSFPSSLVSSGNVEEEESSTVNGLNAFSIFWGGLVRIDVVKVLPETCLTFYGPKRLPIHMVPTEQAEEFYQRELGVLLTPPSGGENAENWKGLESERKLQIKFEDVERPACDIAISGLGWFTVEPVSRSLKNSQPKPVDTAGELILAVHVPKPVEIFVRPPIPVGKAGAEWYQYVELTEKEEEMRPKWYF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00140 552 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 163 339 IPR030378 GO:0005525
Cca04g00140 552 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 340 IPR027417 -
Cca04g00140 552 PANTHER NO-ASSOCIATED PROTEIN 1, CHLOROPLASTIC/MITOCHONDRIAL 35 552 IPR044229 GO:0003924
Cca04g00140 552 CDD YqeH 133 336 - -
Cca04g00140 552 Pfam 50S ribosome-binding GTPase 270 337 IPR006073 GO:0005525
Cca04g00140 552 Gene3D - 164 340 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00140 Cca-Chr4 1302747 1308386 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00140 K13427 - gmx:100798614 984.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00140 04 1302747 1308386 Cca04g00140 04 1302747 1308386 ECH