Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00135 ATGAATTCCCATCTCATGGATTCAAAATCCAAACTTTGGACGCCCCCTTCATCTTCCACCGCcaccaccagcagcagtagcagcagctgcagcGAGAGCGACGACACCCCCTTCTCTTCCCAACGCATCATCCCATTGCTCCCCACTTTCTTCCACCATTCTCACCGATCACTCGCGGTTCTCTCCGGCCACGTGGGCTCCGTCTCATGCCTCGCCCTCTGCGGTGAGTTCATCCTCAGTGCCTCGCAGGGTAAGGATATCATTGTGTGGCAGCAACCAGATTTAAGGCTCTTCGCCAAGTTCGGACAAGGCGACGGCTCCGTCAAGGCCCTCGCCACCGTCGCCAACAAGGTCTTCACCGCACACCAAGACAGCAGAATCAGGGTTTGGAAAGTTTCCAGAAGCTCCGAAAACGTGTTCAAGCTCGTTGACACGCTCCCCACAACAAAGGACTATTTGGGGAAGTTCATGAAGCAGAGCAACTACGTCCAAACCCGGAGGCACCACAAGCGTTTGTGGATTGAACATGCCGATAGTATTTCTTGTTTGACGGTTTATAATGGGTTTGTTTACTCTGGGTCGTGGGACAAGACTCTTAAGGTGTGGAGGATTTCCGATTTGAAGTGTTTGGAGTCGGTGAAGGCTCATGATGATGCTATTAATGGGTTGGTGGCGTGTAAAGGGGTTGTGTATTCTGCTTCTGCGGATGGAAAGATTAAAGTTTGGGGGAGAAAAGATGGGAAGGGGGAGCATTGCTTGAAGGGGGTGTTGGAGGGTCGTAACAAAGATGTTTCTTTTAACTCTGTTGTTGTGTCTGAGGATGGGAAGTGGGTCTATGGAGGAGGGTCTGATGGGTTTGTGATGGGGTGGGAGAGGTTTGACTTTGACTTTGAGAGATGGAAGATGGTTTCTGAGACTAAGGCACATGAGATGGCTGTGTTGTGCATGTGTTTGATGGGGGAGTTTTTGTGCAGTGGTTCGGCTGATAAGAGCATAGGGATTTGGAGGAGAGAGGCTTTTGGTAAGCTTTGTAGGGTTGGGGTCATAAGTGGCCATGAAGGGCCTGTCAAGTGTTTGCAGGCCTCGTCTAATAGAGTTGGTGGTGGCTTTTTGTTGTACAGTGGAAGCCTTGATAAAAGTGTGAGAGTTTGGTGGGTCCCAAGGTATAGTAGTAGTAACAATGCAGATGTAGAGGATAGGGATAACAACTCTACTATACTTGGGAAAATGAATGAATCTATGAGTCCATCTATCGTAACATGTTAG 1266 0.4779 MNSHLMDSKSKLWTPPSSSTATTSSSSSSCSESDDTPFSSQRIIPLLPTFFHHSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGDGSVKALATVANKVFTAHQDSRIRVWKVSRSSENVFKLVDTLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVYNGFVYSGSWDKTLKVWRISDLKCLESVKAHDDAINGLVACKGVVYSASADGKIKVWGRKDGKGEHCLKGVLEGRNKDVSFNSVVVSEDGKWVYGGGSDGFVMGWERFDFDFERWKMVSETKAHEMAVLCMCLMGEFLCSGSADKSIGIWRREAFGKLCRVGVISGHEGPVKCLQASSNRVGGGFLLYSGSLDKSVRVWWVPRYSSSNNADVEDRDNNSTILGKMNESMSPSIVTC 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00135 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 349 384 IPR001680 GO:0005515
Cca04g00135 421 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 399 IPR045182 -
Cca04g00135 421 MobiDBLite consensus disorder prediction 1 36 - -
Cca04g00135 421 Gene3D - 162 413 IPR015943 GO:0005515
Cca04g00135 421 Pfam WD domain, G-beta repeat 175 202 IPR001680 GO:0005515
Cca04g00135 421 Pfam WD domain, G-beta repeat 208 242 IPR001680 GO:0005515
Cca04g00135 421 Pfam WD domain, G-beta repeat 346 384 IPR001680 GO:0005515
Cca04g00135 421 Gene3D - 3 149 IPR015943 GO:0005515
Cca04g00135 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 349 384 - -
Cca04g00135 421 SUPERFAMILY WD40 repeat-like 55 388 IPR036322 GO:0005515
Cca04g00135 421 SMART WD40_4 250 291 IPR001680 GO:0005515
Cca04g00135 421 SMART WD40_4 299 336 IPR001680 GO:0005515
Cca04g00135 421 SMART WD40_4 166 203 IPR001680 GO:0005515
Cca04g00135 421 SMART WD40_4 342 385 IPR001680 GO:0005515
Cca04g00135 421 SMART WD40_4 54 91 IPR001680 GO:0005515
Cca04g00135 421 SMART WD40_4 206 243 IPR001680 GO:0005515
Cca04g00135 421 SMART WD40_4 94 131 IPR001680 GO:0005515
Cca04g00135 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 212 IPR001680 GO:0005515
Cca04g00135 421 CDD WD40 57 384 - -
Cca04g00135 421 PANTHER OS01G0946100 PROTEIN 8 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00135 Cca-Chr4 1266261 1268021 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00135 163 340 Miscellaneous Gene Families AT5G08390 24.324 2.86e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00135 - - gmx:100775295 671.389