Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00134 ATGCTGCTATTTGGGTCATTTACTGAAGATGAAACTCGATCATTGTTGTCAAAGCAGTCTCCTGGGAAAAATGAAAAGCCTGTGGAGAAGAATAAGCTGCAATTTGGTTCTCTGAATTCTGTTACTGTTGAGTCGAACGACCTTCCAACTTCATCAATAGCATCAGATAGTGTTCCACCCTCGGATTCTCTGAAATGTAATGGAGTGAAAAGTGTCAGTGATAATTCtccggaagtgtcaggaacaattaaagagaatggcagcatTACCAATTTCTCTCCTAGCCCTACGAGTACCATTAGTGTAAATGAAGTTGAAGAAAAAAATGTGAATTCTTTTACATTACTCGGTGAAGATGGTCCCTCAAACAAGTTTGCAAATTTGAGCCTAGATGCGTCTGAGGCTGAAAGGTTGAAGAATGTGCTTAAAACTGGCAGTGGTGATGATTCTGCATCGAAATTATCTGATCCTAACCTCCGAAAGGCACCTAATGGACATGCTGTTATGCATGTTAAGGATATATTGCCTAGAGGCCTTATCAACTCTGGAAATCTTTGCTTTCTTAATGCAACCATGCAGGCTCTCTTGTCATGTTCACCGTTTGTTCAGCTTTTACAGCAATTAAGAACTCGCAACCTTCCTAAGGTTGGATATCCCACGTTGTTGGCATTTGCTGAGTTTATAGCCCAATTTGACATGCCAAGCTCAACAAAATTAAAGAACCAAGATACAGATACGTTTGAATCTGGAAGGCCATTTTGCCCTGTTATGTTTGAAGGTGTTCTAAAAAATTTTACTCCAGATGTGCCGAATAGTATTTCAGGAAGACCAAGGCAGGAAGATGCTCAGGAATTTCTGAGCTTTGTAATGGATCAAATGCATGATGAATTACTGAAGCTTGAAGGACAGTTTTCAAGTCTTAATGGTAGCAAATCTTCTCTGGTTTCTTCTGTGGAAGATGATGAATGGGAAACAGTAGGGCCGAAGAATAAATCGGCTGTAACAAGGACTCAAAGCTTTGTCCCATCAGAATTAAGTGGTATTTTTGGAGGACAACTTAGAAGTTTGGTGAGAGCTCAAGGAAATAGAGCTTCTGCCACTGTTCAACCATATCGCTTGCTCCATCTTGACATTTATCCTGATTCTGTTCACACAATTGAGGATGCGCTGCACTTGTTTTCTGCACCAGAAACTCTTGAGGGGTACCGAACATCAGTCACTGCAAAGGCTGGTGTTGTGACTGCAAGAAAATCTGTACAGATAGTGACACTTCCTCAAATAATGATATTGCACCTCATGCGTTTTAGTTATGGAAGCCAGGGAAGCACCAAATTGCACAAGCCTGTGCATTTTCCTCTTGAGTTGGTATTTGGTCGTGATTTGCTTGTTTCGCCATCCACCGAGGGCCGAAGGTATGAACTTGTTGCTACAATTACTCATCATGGAAGGGAGCCTTCAAAGGGGCACTACACAGCTGATGCCCAATACCCCAATGGTCGGTGGCTACGATTTGATGATGCATCTGTCTTTGCCATTGGAACAAATAAGGTGTTGCATGACCAGGCATATGTCCTTTTCTACAAACAGATGTGA 1593 0.4068 MLLFGSFTEDETRSLLSKQSPGKNEKPVEKNKLQFGSLNSVTVESNDLPTSSIASDSVPPSDSLKCNGVKSVSDNSPEVSGTIKENGSITNFSPSPTSTISVNEVEEKNVNSFTLLGEDGPSNKFANLSLDASEAERLKNVLKTGSGDDSASKLSDPNLRKAPNGHAVMHVKDILPRGLINSGNLCFLNATMQALLSCSPFVQLLQQLRTRNLPKVGYPTLLAFAEFIAQFDMPSSTKLKNQDTDTFESGRPFCPVMFEGVLKNFTPDVPNSISGRPRQEDAQEFLSFVMDQMHDELLKLEGQFSSLNGSKSSLVSSVEDDEWETVGPKNKSAVTRTQSFVPSELSGIFGGQLRSLVRAQGNRASATVQPYRLLHLDIYPDSVHTIEDALHLFSAPETLEGYRTSVTAKAGVVTARKSVQIVTLPQIMILHLMRFSYGSQGSTKLHKPVHFPLELVFGRDLLVSPSTEGRRYELVATITHHGREPSKGHYTADAQYPNGRWLRFDDASVFAIGTNKVLHDQAYVLFYKQM 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00134 530 MobiDBLite consensus disorder prediction 33 99 - -
Cca04g00134 530 MobiDBLite consensus disorder prediction 1 99 - -
Cca04g00134 530 MobiDBLite consensus disorder prediction 143 162 - -
Cca04g00134 530 Gene3D Cysteine proteinases 165 529 - -
Cca04g00134 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 472 490 IPR018200 GO:0004843|GO:0006511
Cca04g00134 530 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 178 193 IPR018200 GO:0004843|GO:0006511
Cca04g00134 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 530 - -
Cca04g00134 530 SUPERFAMILY Cysteine proteinases 173 528 IPR038765 -
Cca04g00134 530 Pfam Ubiquitin carboxyl-terminal hydrolase 178 527 IPR001394 GO:0004843|GO:0016579
Cca04g00134 530 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 177 530 IPR028889 -
Cca04g00134 530 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 2 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00134 Cca-Chr4 1259370 1264626 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00134 174 530 Miscellaneous Gene Families AT2G24640 27.824 4.84e-22 97.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00134 K11841 - gmx:100799656 916.761