Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00130 ATGGCAGACAGTGTGGTTTCCTTTGTTTTAGATCACTTGTCCCAACTGGTGGAACATGAAGCAAGGTTGCTAAGTGGCGTGGAAGACAAGGTGAAGTCCCTCGAGAGGGAGCTTCAGATGATCAACGTCATCCTAAGAACCACAAACAGCAACAACGACATTCAGAAAACAGTGGTGAGCCAAATCAGAGATGTGGCCCATGAAGCTGAGGATGTCATTGACACGTACGTTGCCAAAGTGGCCCTGCACAACAGGAGAACCATGCTGGGGAGGCTACTCCATGGAGTTGACCAAACAAAGTTGCTCCATGACGTATCCGAGAAAATAGACGAGATCATAACAACTCTCAACCAGATACGTGAAAACAAGATCAAATACAGCGAGTTCCAAGAAAGAAATCATCAATCCATagcagaagaggaggaggaggagaaggagagggagaggTTACTTCACAAGCTAAGAAGAAATGTAGAGGAGGAACATGTAGTGGGTTTTATCCGTGGATCTCAAGCAATCATCAAGCTACTCAAGGAAGGTGGCTCACGGCGTAAtgtggtctccatcatcggcatgggggggttgggcaagaccacccttgcccgaaaagtttataatgatagcaagGTGAAACAAGGCTTTAGTTGTTGTGTTTGGGTGTACGTGTCAAACGAGTGTAGAGCTAAGGAGCTTTTGCTTAGTCTTCTTAAGCATTTGAGGCCAAACCTCGAAACTGAACTTCAAGAAGAAAACAACAAAGGAAAAAAATTCACTGAAGAACAAGACATTTTTAACTTGAGTGTGGAGGAGCTGAAGAAACTGGTGCGGCAATACTTGGAGAGGAAAACAAGGTATCTGGTGGTCCTCGATGACTTGTGGAAAACACAAGATTGGGACGAGGTGCAAGATGCTTTTCCCGACAACAACAGAGGCAACAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCCTTGCATACTAGTCTTCATCCTCCATACTACCTTCAATTTCTCAGCCAAGAAGAAAGCTGGGAGCTCTTTCGTAGGAAAGTGTTTAGAGGGGAAGAATGCCCTTTTGAACTAGAGCCTCTAGGCAAACAAATAGTGGCAAGTTGTCGCGGTTTGCCACTCTCTATTGTTGTATTAGCAGGATTGCTAGCCAACAAGGAAAAGTCACACAGGGAATGGTCCAAAGTGGTGGGTCACGTCAACTGGTATCTTACTCAAGACGAGACTCAAGTGAAGGATATAGTTCTGAAGCTCAGTTATGATAACTTGCCAAGAAGATTGAAACCATGCTTTCTATATTTTGGGATATTCCCTGAAGACTTTGAAATCCCTGTTAGGCCATTACTACAACAATGGGTTGCAGAAGGGTTTATACAAGAAACAAGAAATAGAGACCCAGATGATGTGGCAGAAGACTACTTGTACGAGCTCATTGATCGTAGTTTGGTCCAAGTAGCAGCAATAAAGACTAGTGGAGGTGTGAAAACTTGTCACATCCATGATCTTCTCCGAGATCTTTGTGTATCGCAGAGCAAAGGGGACAAGATTTTTGAAGTCTGCTCAGATAATGACATTCAAATTCTAACAAAACCTCGCAGGTTGTCCTTCCATTGTGACATGGGCCACTACATTTCTTCAAGCAACAAAGACCATTCATGTATCCGTTCTTTGTTCTTCTTTGGAATATATTCCAATTTTACTGGGAACGAGTGGGAATGGCTTTTCAAAGGCTTCAAATTGGTTCGAGTGTTAGAGCTTGGAAAAAACCATTGCGCAGGAAAGATCCCATCTAATTTGGGGGACTTTATCCACTTAAGGTATTTGAGAATTGACTCGAATTTTGGTATAATTATTCCAACTTCCATACTTACCCTTCAGAATTTACAAACAGTAGATTTAGGTAATTGGTTTAGGGAAATCCCAATTTGTTTCCCTGCTCAAATGTGGAAGCTCAAACATTTAAGGCACCTGTATGGGCAAGGACCTGTGAAGCTTCAAGGCCACTATTCAGGATCAAATGAGGTTATGTGGAATCTCCGAACCATCTTCCCCATTGATATTGATACACAAACATTGTCTCTGATGAAGAAAGGAAGCTTCCCCAATCTTGTGAAATTGGGGTTGTCAATCAATTCGGACCGCCAAGGTAAGTGGCCAAAGTTGTTGCAGAGCTTACAAGAATTAAGTCATTTGAATATCTTAAAGATTTGCCTCCGAGGGGATTTTGATGCTTCAATAGGCACAGTGTCAAGCATATGGCGGTTTGGTTGTGAGCCACAGGAGCTATTACAAAGCCTAGGGCTGTTGACTCATATAACTACGTTGAAAATCACCAATATCTGCAGCCTTATGATAACGGTTCCTCCAAATGTCACCAAGTTAACATTGCGTGGTATTAGTAGCATCACTAGGGAGGGGCTGAATGCGTTGAGAAATCACACCAAACTCCAAATTTTGAGTCTATATGGAGACTATGGCTCTAACATTAACCTCAATTGTGTTGTAGGCGGCTTTCCACAACTGCAAGTATTGCAATTGAAAAAGTTCACCTCTGTAAATTGGAAATTAGGCAATGGTGCAATGCCACGTCTTCACACTCTAGTCATCATCAACTGTCAAAGTTTAGATGATCTTCCAAATGAATTGTGGTCTCTCACTGCCTTCAGAAAACTGCATGTAAAACAACCCTCACAACCAATGCTTCGTATGCTACGGGATTTGAAAATAAAGGATAGGGTTCAAGTCATAGTCGATGATCATGACAACTAG 2778 0.405 MADSVVSFVLDHLSQLVEHEARLLSGVEDKVKSLERELQMINVILRTTNSNNDIQKTVVSQIRDVAHEAEDVIDTYVAKVALHNRRTMLGRLLHGVDQTKLLHDVSEKIDEIITTLNQIRENKIKYSEFQERNHQSIAEEEEEEKERERLLHKLRRNVEEEHVVGFIRGSQAIIKLLKEGGSRRNVVSIIGMGGLGKTTLARKVYNDSKVKQGFSCCVWVYVSNECRAKELLLSLLKHLRPNLETELQEENNKGKKFTEEQDIFNLSVEELKKLVRQYLERKTRYLVVLDDLWKTQDWDEVQDAFPDNNRGNRILITSRLKEVALHTSLHPPYYLQFLSQEESWELFRRKVFRGEECPFELEPLGKQIVASCRGLPLSIVVLAGLLANKEKSHREWSKVVGHVNWYLTQDETQVKDIVLKLSYDNLPRRLKPCFLYFGIFPEDFEIPVRPLLQQWVAEGFIQETRNRDPDDVAEDYLYELIDRSLVQVAAIKTSGGVKTCHIHDLLRDLCVSQSKGDKIFEVCSDNDIQILTKPRRLSFHCDMGHYISSSNKDHSCIRSLFFFGIYSNFTGNEWEWLFKGFKLVRVLELGKNHCAGKIPSNLGDFIHLRYLRIDSNFGIIIPTSILTLQNLQTVDLGNWFREIPICFPAQMWKLKHLRHLYGQGPVKLQGHYSGSNEVMWNLRTIFPIDIDTQTLSLMKKGSFPNLVKLGLSINSDRQGKWPKLLQSLQELSHLNILKICLRGDFDASIGTVSSIWRFGCEPQELLQSLGLLTHITTLKITNICSLMITVPPNVTKLTLRGISSITREGLNALRNHTKLQILSLYGDYGSNINLNCVVGGFPQLQVLQLKKFTSVNWKLGNGAMPRLHTLVIINCQSLDDLPNELWSLTAFRKLHVKQPSQPMLRMLRDLKIKDRVQVIVDDHDN 925
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00130 925 SUPERFAMILY L domain-like 502 896 - -
Cca04g00130 925 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 437 IPR027417 -
Cca04g00130 925 Gene3D - 337 422 IPR042197 -
Cca04g00130 925 Coils Coil 102 122 - -
Cca04g00130 925 Coils Coil 233 260 - -
Cca04g00130 925 Gene3D - 5 105 - -
Cca04g00130 925 Gene3D Ribonuclease Inhibitor 520 918 IPR032675 -
Cca04g00130 925 CDD RX-CC_like 2 121 IPR038005 -
Cca04g00130 925 Pfam NB-ARC domain 173 425 IPR002182 GO:0043531
Cca04g00130 925 PANTHER DISEASE RESISTANCE PROTEIN RP 48 914 IPR044974 GO:0006952
Cca04g00130 925 Coils Coil 137 160 - -
Cca04g00130 925 Gene3D - 423 514 IPR036388 -
Cca04g00130 925 PANTHER - 48 914 - -
Cca04g00130 925 Pfam Rx N-terminal domain 5 84 IPR041118 -
Cca04g00130 925 Gene3D - 145 330 IPR027417 -
Cca04g00130 925 PRINTS Disease resistance protein signature 186 201 - -
Cca04g00130 925 PRINTS Disease resistance protein signature 372 386 - -
Cca04g00130 925 PRINTS Disease resistance protein signature 862 878 - -
Cca04g00130 925 Coils Coil 17 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00130 Cca-Chr4 1218912 1222071 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00130 569 782 Receptor kinase-like Gene Family AT1G17750 27.092 2.67e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00130 - - gmx:100814688 1194.49