Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00125 ATGGATGGTTACGAGGCTACTAGAATTGTGTTCTCAAGGATCCAAAACTTGGACCCTGAAAACGCTTCCAAAATCATGGGTATGCTTCTGCTTCAAGACCATGGTGAGAAGGAAATGATAAGGCTTGCATTTGGTCCAGAAGCACTTGTTCACTCTGTGATTGTGAAAGCTCGCAAGGAGTTGGGTTTACCCTCGAACTCTCCGCCAACACCCTCCACTCCTCCTTCTCCTTCACCCTTTCTCTTCAGGCAAAACTCAACTTCTTCTTCAAGGCTCAGTGCTATAAACCTCCCTCCTGCACTCACTATCCCAAACCcttcttcatcttcttctgcttcttGGCCTACTGTGACTGAGCTTCAAACCCCTGATGATTTGATGAGCCCCAACCACATGGTTGTTGGCTCCTCCACTTCTTCATCTTCCTTACCTTTCTATGCTAACGGAGGCTCAGATCCAATTGATGACTTTCAACTCCAAGACCAGCTTTCTTTCTTGAATGATGGTTCTCCCACTAGTGCTGCTCTTGGCCACAAGAACAACCCTGATTTGTTTTACCCTCCTCACTCAGACTTGTCTTCAAGCCCTACTTCTGCTGCTGACCCTTCTCTCTTCCCTTCCTATGGCTGGGGAGGGTCTCTCCACCGCAGGAGTTGTTCAGTCAATGATGCTTGTTTGGGCTCTGAGGACCCTAATTCCGGGTTGGGGTGGAAGCCATGCCTTTACTTTGCAAGAGGGTACTGTAAGAATGGGACTAGTTGCAGGTTCCTTCATGGTGGACTTGGAGATGGTGATGGTTCTGCAATGGTTGGATCTCCTAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTTCTCAGATCCAAATCTGCTCAGCAGCAAAGACTGGCTGCTGCTTCCCAGCTCATGGCCAATTCCTCTTTTCCATACTCACCAAAGTGCATGAATCTACTGTTGCAGCAGCAACAGAATGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGAGTGAGGATTTGCATAAATTTGGACGATCCAGGCTTGAAAGGAATGATTTTTCTTTGAACAGTCCTGGGATGGTGAACCCAGCTTCCAGGCAGATCTACTTGACTTTCCCAGCTGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTTAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCATACCAGCAGAAGAGGATGTTTGGCTTTGTCACCTTTGTTTATCCGGAGACTGTGAAGCTCATTCTTTCCAAAGGAAACCCTCATTTTGTGTGTGATGCTCGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGAAAAGTTCCTGACAAGTACAGGAAGCAGCAGCAGCAGGTGGATAGAGGAGATTTTTCACCTTGTGGTACTCCTACTGGACTAGATGCTAGAGACCAGTATGATCTTCAACTTGGAGGCAGAATGTTCTACAACACTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGCAAGCTGATTTGCAGCAAGCTCTTGAGCTTCAAAGTAGGCGGTTGATGGGCTTGCAACTTCTTGACATCAAGAAGCATCACCAACGTGCACTCTCCACTGGAAGTCCAGTTCCTTCCCCTACTCACTCTCCCAACATGTTCAATCAAAATCTTGTTCTTCCTTCCTTTCACATCAGTTCGGAGGCTCCAGAGGAGAATGGTTCAAGTTCTGCTGCAGCTAGTACTGCACCGGTTTCTGCTGGTCAGCAGCAGGCGGTCAACGTTTTGGTTGGCAAGGAAGTGGTGGTCAATGGTGAGAATGGATACAGTGAAGGCAATGGCAAGCAGAGCTCTAGCCATGAGGATCGTGATTTGCAAGAATGTTTGGAGCATAATCTTCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGAGACTTGATGGCCCCCTTCTCCAATGGACCTAATGAGGCCATTGATGCAGATGCCTCAGCTGCATCTGCCAACTCTAAATTTGGCACTAGCACATTGCTTCCAGCAGCATCTGCTCTTGACATGGGGACTTTCAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTGCCCATGGAACTATTGGGATGTTCGCCGGCACTGGTGGACCGATTGGCATTTAG 2136 0.4743 MDGYEATRIVFSRIQNLDPENASKIMGMLLLQDHGEKEMIRLAFGPEALVHSVIVKARKELGLPSNSPPTPSTPPSPSPFLFRQNSTSSSRLSAINLPPALTIPNPSSSSSASWPTVTELQTPDDLMSPNHMVVGSSTSSSSLPFYANGGSDPIDDFQLQDQLSFLNDGSPTSAALGHKNNPDLFYPPHSDLSSSPTSAADPSLFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGDGDGSAMVGSPSKIEMMEQCHELLRSKSAQQQRLAAASQLMANSSFPYSPKCMNLLLQQQQNDTQRAAAAALMMSEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVDRGDFSPCGTPTGLDARDQYDLQLGGRMFYNTQDMLWRRKLEEQADLQQALELQSRRLMGLQLLDIKKHHQRALSTGSPVPSPTHSPNMFNQNLVLPSFHISSEAPEENGSSSAAASTAPVSAGQQQAVNVLVGKEVVVNGENGYSEGNGKQSSSHEDRDLQECLEHNLPDSPFASPTKAAGDLMAPFSNGPNEAIDADASAASANSKFGTSTLLPAASALDMGTFKSYNCQIPRFSSAHGTIGMFAGTGGPIGI 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00125 711 MobiDBLite consensus disorder prediction 97 116 - -
Cca04g00125 711 MobiDBLite consensus disorder prediction 61 85 - -
Cca04g00125 711 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 378 423 IPR000504 GO:0003723
Cca04g00125 711 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 442 IPR000504 GO:0003723
Cca04g00125 711 SMART rrm1_1 367 437 IPR000504 GO:0003723
Cca04g00125 711 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 699 - -
Cca04g00125 711 CDD RRM_AtC3H46_like 368 437 IPR034365 -
Cca04g00125 711 SUPERFAMILY CCCH zinc finger 237 259 IPR036855 GO:0046872
Cca04g00125 711 SMART c3hfinal6 236 260 IPR000571 GO:0046872
Cca04g00125 711 MobiDBLite consensus disorder prediction 446 468 - -
Cca04g00125 711 ProSiteProfiles Zinc finger C3H1-type profile. 234 261 IPR000571 GO:0046872
Cca04g00125 711 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 239 259 IPR000571 GO:0046872
Cca04g00125 711 Gene3D - 229 299 - -
Cca04g00125 711 SUPERFAMILY RNA-binding domain, RBD 378 460 IPR035979 GO:0003676
Cca04g00125 711 MobiDBLite consensus disorder prediction 528 547 - -
Cca04g00125 711 MobiDBLite consensus disorder prediction 531 547 - -
Cca04g00125 711 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN-RELATED 1 699 - -
Cca04g00125 711 Gene3D - 364 462 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00125 Cca-Chr4 1164056 1169304 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00125 - - gmx:100801341 1216.45