Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00123 ATGACTCAATCACAAGTGAATCTATCGTCTCAAAATGTCATTTCAGTTGTAGAGACCATACGAAGATCTGCGAACTACAAACCAAACATTTGGAAATACCATTTTTTGCAGTCACTTACCAGTAAATACAATAAGGAAGAATTTGTGATTCAGTTAAACCAGCTGGTGATGGAAGTAAAGGGTCTTTTTGTTCAAGAGACTTGCCTGTTGAAAAAATTAGAGTTGGTTGATTGGATCCAAAAGCTAGGTCTTACCAACTATTTTCAAAAGGAAATCAATGAGTTTCTTGAATCTATTCTTGTCTATGTCCAAAATGGCAACATTAATCCTAATGTAGAACAAAATTTGCATGTATCTGCACTATGCTTCAGGCTACTACGACAACATGGATATCCAGTTTTGCCCGATACAGTAAGCAGCTTTTTAGATGAAAAGGGTAAAGTGATGAGGAAAAACTCAAATGCTGGTGGCGATGCTAAAGATGTTGTGGAGCTTCTTGAGGCCTCACATTTGGGCTTAGAAGGAGAAACTATTTTGGATGAGGCCAAAACTTGTGCCATAAATTCTCTTAAGGATGCTTCCATCAACATCAACCAACTAACCAAAATGGTCCATGCCTTAGAGCTTCCATCCCATTGGAGAGTTCCATGGTTTGATGTCAAATGGCACGTGGAGCAATACAAAAACGAGAAAAATATGAACCCTCTTTTACTTGCATTGGCTAAATTAAATTTCAACATGATTCAGGCCACACTTCAATCGGAGGTCAAGGAATTATCCAGGTGGTGGGAGAATCTTGGCATAGAAAAAGAGTTGAGTTTTGCAAGAAATAGGTTGGTTGAAAGCTTCATGTCTGCAGTAGGAGTTGCTTTTGAGCCCAAGTACAAATCCCTTAGGAAATGGCTCACTAAAGTTATTATTTTCGTACTAGTCATTGATGATGTTTATGATATACACGCTTCATTTGAAGAGTTAGAGCCATTCACAATGGCGTTTGAGAGATGGGACGATAAAGAGGTTGATGAACTTCCAGAGTACATGAGAATTTGCGTCCATGCACTTAAAGATGTCACAGATGAAATTGCTTATGAAATTGGCGGGGAAAATAACTTTCATTTGGTGTTACCTTACCTAAAGAAAGCGTGGATAGACTTTTGCAACACATTGTACGTGGAAGCAAAGTGGTACAACAAGGGTTACATTCCATCGTTGCAAGAATATTTAAGCAATGCTTGGATTTCATCTTCAGGGCCAGTAATTTTCTTGCATTCATATTTTGCTACAATGCATCAAGCAACCAATGCGAATCATGAGATAGGCGATTTTCTACACACTTGTGAAGATTTGATCTACAATGTATCTCTTGTTATTAGACTGTGCAATGATTTAGGGACCAGCGTGGCTGAAAGAGAAAGGGGTGATGCTGCTTCGTCAATCCTTTGCTATATGAATGAAATGGAAGCTTCGGAGGAGAAAGCAAGAAAGCATATCCAAGACATGATAAACAAAGCATGGAGAAAGATAAATGGGTTTTGTTTGAGCCAAGTTGCTTCAGTGGAGCCATTTGTAACTCAAGCCCTAAATATAGCTCGTGTGGCCCATACCCTTTATCAAAATGGTGATGGGTTTGGTATCCAGGACCGTGATATCAAAAAATATATCTTATCACTAGTTGTGGAGCCACTTTAG 1689 0.3878 MTQSQVNLSSQNVISVVETIRRSANYKPNIWKYHFLQSLTSKYNKEEFVIQLNQLVMEVKGLFVQETCLLKKLELVDWIQKLGLTNYFQKEINEFLESILVYVQNGNINPNVEQNLHVSALCFRLLRQHGYPVLPDTVSSFLDEKGKVMRKNSNAGGDAKDVVELLEASHLGLEGETILDEAKTCAINSLKDASININQLTKMVHALELPSHWRVPWFDVKWHVEQYKNEKNMNPLLLALAKLNFNMIQATLQSEVKELSRWWENLGIEKELSFARNRLVESFMSAVGVAFEPKYKSLRKWLTKVIIFVLVIDDVYDIHASFEELEPFTMAFERWDDKEVDELPEYMRICVHALKDVTDEIAYEIGGENNFHLVLPYLKKAWIDFCNTLYVEAKWYNKGYIPSLQEYLSNAWISSSGPVIFLHSYFATMHQATNANHEIGDFLHTCEDLIYNVSLVIRLCNDLGTSVAERERGDAASSILCYMNEMEASEEKARKHIQDMINKAWRKINGFCLSQVASVEPFVTQALNIARVAHTLYQNGDGFGIQDRDIKKYILSLVVEPL 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00123 562 Pfam Terpene synthase family, metal binding domain 238 507 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cca04g00123 562 Gene3D Farnesyl Diphosphate Synthase 28 552 IPR008949 -
Cca04g00123 562 SFLD Terpene Cyclase Like 1 C Terminal Domain 233 561 IPR034741 -
Cca04g00123 562 PANTHER OS04G0344100 PROTEIN-RELATED 21 562 - -
Cca04g00123 562 CDD Terpene_cyclase_plant_C1 21 561 IPR044814 GO:0010333|GO:0016102
Cca04g00123 562 SFLD Isoprenoid Synthase Type I 233 561 - -
Cca04g00123 562 PANTHER ALPHA-FARNESENE SYNTHASE 21 562 - -
Cca04g00123 562 Gene3D - 67 233 IPR036965 GO:0010333|GO:0016829
Cca04g00123 562 Pfam Terpene synthase, N-terminal domain 30 204 IPR001906 GO:0010333|GO:0016829
Cca04g00123 562 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 30 231 IPR008930 -
Cca04g00123 562 Coils Coil 483 503 - -
Cca04g00123 562 SUPERFAMILY Terpenoid synthases 233 562 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00123 Cca-Chr4 1131812 1135187 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00123 K14173 - gmx:100812119 907.131