Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00095 ATGGCATTTCACGTAGCTTGTCCAATTACATGTCGCCGAATCTGTTTCTGCGCGCTAGGGTTTCCGCGAGCGCTCCACGCTCCAGACCCTGCCAATGCCTTTCTCCACGACGTCGCTGCGCTCGGGGACTTCCTCGCCAACGCCACCGTCGACGACGCCACCGTCCAGGTCGCCGTCCCCAAGGTTTTGCCGCCGCCGCCTCCGCCACCCACCACGGACGGTGTTCCTCCCGGCGTCGACGCTATCGATGAGTCCGCCTCCATGAAGGCCAAGCGCATCGCGCTCCAGCGCAAGGGCGCCGCCGCCATGATCGCCGCCGAGGAGTACGCTCGCCGGTTTGAGTCCGGCGACGTTGTGGTGAGTAATACACCCGGGAATCTTACTGGAGATGAGCAGGGTCAATCGAACAGGACCTATTGTCGATTTTGCAAGTGTGGAGAAGTTGAAGGAAGTGAGAGAGCTCAAAAGATGCTATCGTGCAAAAGTTGTGGTAAGAAATACCATAGGAACTGCTTGAGGAGTTGGGGTCGACATAGAGATTTATTTCATTGGAGTTCATGGACCTGTCCTCTTTGCCGAATTTGTGAGGCTTGCAGAAGGACTGGTGATCCATTTAAATTCATGTTTTGCAAAAGGTGTGATGGTGCTTACCATTGTTATTGTCTGCAACCTCCTCACAAGAGTGTTTGTAATGGGCCCTATTTGTGCCCAAAACATTCAAGGTGTCACAGTTGCGGATCCAATGTCCCTGGAAATGGACTAAGTGTGAGGTGGTTTATGTCATACACCTGCTGTGATGCATGCGGAAGATTGTTTACAAAAGGGAACTACTGTCCTGTTTGTTTGAAGGTTTACAGAGATTCAGAATCAACACCTATGGTTTGTTGTGATACTTGCCAGCTGTGGGTACATTGCCAGTGTGATAATATCAGTGATGAAAGGTATCACCAATTTCAAGTGGATGGGAATTTGCAGTATAAATGTCCCACGTGTCGTGGGGAATGTTATCAGGTTAAGAATCCTGAAGATGCTGCACAAGAGATTTGGAGGAGAAGGAATATTGCTGAGAGAGATTTGATTGCTAGCTTGAGGGCTGCAGCTGGTTTGCCAACTCAAGAAGAGATATTTTCTATTTCACCATATTCAGATGATGAGGATGGTGGGCCTTTAAAGTTAAAGAGTGAATCTACTCGTTCCTTTAAGTTCTCTCTAAAGAATTTGTCCAGTGACTCGCCAAAGAAGAAATCTTCAAACAAAAAGACTGCTAAGAAAAAAGACTCTCAGTCATTTATGACTAGTAAAATCGACACACACAACAGTTTTGAAGGACATAGTGATATTAAATCTTTGCATAGCTTAGATGATGATAAGAATGATGATGTACAATCTCAGAGAAATGAAGGTCCAGATGTTTACTCATCACCTGCTACTGGGAGCCTGAGTCAAACTGATGCTCCTTGCCCAATTAATCAGCCAGGAGTTTTGAAACATAAGTTTGTTGATGAGGTGATGGTCAGTGATGAAGAGAGGAAACCTAGATTTGTTCGAATTAAAAGTAACAAAGCACATATTTTGGATAGTGAAGAGGAAAGTGGAAAACAGAATGTTAAGACTCAGAATGTGAAAGGGAAGAAGTTGGTTATTAATTTGGGTGCGCGGAAAATTAATGTGGCTAGTTCCCCACGGTCTGATACTTCAAGCTGCCAAAAAGATCAAGATCTGGTGGCTGTTAATGGAAATGAAGATATAAGCCAATCGAGGAAGGGAGACAAGTTTGCATCAGACAGACAAGATGGCACAGCTAGGCATATTGATGGAAACAGAGTCGATTCTGGGCAATCAAATTTTTTCAAGGTTTCGGGAAGAGAAGGAAATTTGATTAAGCTGGGAAAAGTTAAGCCAGATGTTTCTGAATTCAACCCGACCTCTGGTAGAGGCAATATGTCTGATGGGCGGGTAAAACATAATACTGATGGAACGATTGATCAGGTTGGACTAAAAGTCACATCAAGAGGCGAAAGGGTGCATCTGGGGAAGCAATCAGAAGTCAGCTCTGATGCATGTGATGAGACAGATGACAATAATAATCGTACACCTTCACATTCTTTGCCAAAAGATTCTAAACCTTTATTAAAATTTAAATTCAAGAAACCAAGCATTGAAAGCCAAAATTCTCCTCATCAGGAGGAGGAGAAGATAATCAAGGGCCAGAGGTCAAAAAGGAAGAGACCTTCTCCTTTTAAGGAGAAAACACCATTTAATGAGTCTGAAAATGCAAGTCAATCACATCAAGACAGTGTAATGGATGAGATCTTGGATGCAAACTGGATATTGATGAAATTGGGCAGTGATGCAATTGGAAAGAGAGTTGAAGTTCATCAGTCATCTGACAATTCTTGGCACAAGGGAGTGGTCACTGACGTAGTTGACGGCACTTCAAAGTTACATGTTGCCTTAGACGATGGGAAGGTGAAGACCTTGGAACTCAGGAAACAGGGGGTCCGTTTTGTTTCTCAAAAGCAGAAGAGATCAAAGACATGA 2541 0.4443 MAFHVACPITCRRICFCALGFPRALHAPDPANAFLHDVAALGDFLANATVDDATVQVAVPKVLPPPPPPPTTDGVPPGVDAIDESASMKAKRIALQRKGAAAMIAAEEYARRFESGDVVVSNTPGNLTGDEQGQSNRTYCRFCKCGEVEGSERAQKMLSCKSCGKKYHRNCLRSWGRHRDLFHWSSWTCPLCRICEACRRTGDPFKFMFCKRCDGAYHCYCLQPPHKSVCNGPYLCPKHSRCHSCGSNVPGNGLSVRWFMSYTCCDACGRLFTKGNYCPVCLKVYRDSESTPMVCCDTCQLWVHCQCDNISDERYHQFQVDGNLQYKCPTCRGECYQVKNPEDAAQEIWRRRNIAERDLIASLRAAAGLPTQEEIFSISPYSDDEDGGPLKLKSESTRSFKFSLKNLSSDSPKKKSSNKKTAKKKDSQSFMTSKIDTHNSFEGHSDIKSLHSLDDDKNDDVQSQRNEGPDVYSSPATGSLSQTDAPCPINQPGVLKHKFVDEVMVSDEERKPRFVRIKSNKAHILDSEEESGKQNVKTQNVKGKKLVINLGARKINVASSPRSDTSSCQKDQDLVAVNGNEDISQSRKGDKFASDRQDGTARHIDGNRVDSGQSNFFKVSGREGNLIKLGKVKPDVSEFNPTSGRGNMSDGRVKHNTDGTIDQVGLKVTSRGERVHLGKQSEVSSDACDETDDNNNRTPSHSLPKDSKPLLKFKFKKPSIESQNSPHQEEEKIIKGQRSKRKRPSPFKEKTPFNESENASQSHQDSVMDEILDANWILMKLGSDAIGKRVEVHQSSDNSWHKGVVTDVVDGTSKLHVALDDGKVKTLELRKQGVRFVSQKQKRSKT 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00095 846 SUPERFAMILY FYVE/PHD zinc finger 275 335 IPR011011 -
Cca04g00095 846 MobiDBLite consensus disorder prediction 558 583 - -
Cca04g00095 846 MobiDBLite consensus disorder prediction 634 765 - -
Cca04g00095 846 PANTHER HISTONE ACETYLTRANSFERASE 2 840 - -
Cca04g00095 846 MobiDBLite consensus disorder prediction 584 605 - -
Cca04g00095 846 ProSiteProfiles Zinc finger PHD-type profile. 137 195 IPR019787 -
Cca04g00095 846 MobiDBLite consensus disorder prediction 439 464 - -
Cca04g00095 846 MobiDBLite consensus disorder prediction 558 616 - -
Cca04g00095 846 CDD RING-H2 140 193 - -
Cca04g00095 846 MobiDBLite consensus disorder prediction 723 737 - -
Cca04g00095 846 ProSiteProfiles Zinc finger PHD-type profile. 275 334 IPR019787 -
Cca04g00095 846 ProSitePatterns Zinc finger PHD-type signature. 140 192 IPR019786 -
Cca04g00095 846 SMART PHD_3 194 240 IPR001965 -
Cca04g00095 846 SMART PHD_3 277 332 IPR001965 -
Cca04g00095 846 SMART PHD_3 142 193 IPR001965 -
Cca04g00095 846 PANTHER PHD FINGER FAMILY PROTEIN 2 840 - -
Cca04g00095 846 SUPERFAMILY FYVE/PHD zinc finger 184 245 IPR011011 -
Cca04g00095 846 MobiDBLite consensus disorder prediction 465 488 - -
Cca04g00095 846 ProSitePatterns RecR protein signature. 265 287 IPR015967 GO:0006281|GO:0006310|GO:0046872
Cca04g00095 846 MobiDBLite consensus disorder prediction 672 696 - -
Cca04g00095 846 MobiDBLite consensus disorder prediction 751 765 - -
Cca04g00095 846 ProSiteProfiles Zinc finger RING-type profile. 140 193 IPR001841 -
Cca04g00095 846 MobiDBLite consensus disorder prediction 403 492 - -
Cca04g00095 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 249 IPR013083 -
Cca04g00095 846 SUPERFAMILY FYVE/PHD zinc finger 133 193 IPR011011 -
Cca04g00095 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 272 334 IPR013083 -
Cca04g00095 846 MobiDBLite consensus disorder prediction 412 431 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00095 - - gmx:100815407 1460.28