Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00094 ATGGGATTTGATAATGAGTGCATAGTGAACATTCAATCTCTCGCTGGAGAGTACTTCTGTCCTGTCTGTCGGCTGCTTGTATTTCCAAATGAAGCTTTACAGTCACAATGTACTCATTTATACTGCAAGCCATGTTTGACATACGTTGTGAGCACTACAAGGGCTTGCCCATATGATGGGTACTTGGTTACTGAGGCAGATTCCAAGCCTCTGACAGAGTCGAATAAGGCACTTGCTGAAACTATTGGAAAAATAGCAGTTCATTGTCTTTACCATAGGAGTGGATGCACATGGCAAGGAACTTTGTCTGAGTGCACATCTCATTGTTCTGGATGTGCCTTTGGCAATTCTCCTGTTGTTTGCAACAGGTGTGGGATCCAAATAGTGCATCGCCAAGTACAAGAACATGCACAAAACTGCCCTGGTGTGCAAGGTCAGGTACAGCAGGTGGCCATTACCCAGGATCCTTCAGCTACTAGTGCTGTTGCTTCTACGGATCAAAACCAGACCACTGCTCCAGTTGCAGCAACGGCTTCACAAGCTCTCACTTCTCAAACTGCTGTCACAACTATGCCTGGGCAGGTTTcaaatcagctacctaactctgcttcccaaacccaagctgttgtgcagccaacagcagagcaatggtatcagcagcagcaacaatatcaacaatactaccagcaataccctggacaagatccataccaacagcagtatcaacattactacccatatcaacaatctggggttccacagtaccagcAGGCCTATGGTCAGCCCCAACCTCAAGCTCAATCACAGCCCCAGCCACAGACCCAACACCAATCTCAGCCTCAACTCCAACCACAACCTCAAGCACAAGGACTATCTCAACCGCCTTCACATATTCAGGCTCCTGTTGCCCCATCATCTCAGAATCAGATGCAAGTTCAACAACAACCGCAGCAACTTCAACCTGCTGTCCAGCCACATGGTCAGACAAATCACGCACCAGGCCATGGGCAAGCCCTCCCTCAGGCTCAAACTCAGCCTTATCCTTACCCCCAAGTCCAGCCTCATTCTGTCCAACCTCAGCCCCAACAACATATGCAAGTGCCTCCTTATCAGCAGCCTCTTCCTCAAATGCAGCATTCACAACCTCAAATTCAACAACCAGTTCAGAAGTATCCTGTTccccaacctcaagttcatccacaactgcaacctaatgctccagttcaacATGTGTCTCAGCTCCCAATGCCTCCTCACCAGCCAGTGACTCCCAATGTTCAGCCTCAAGTGCAAAGTGCAACGTCGCATTCAGTGACAGGGCATCATTCTTATCCCCAACCTCTGCCTCACCCAAATATGCAACCAGGAATCCCTCATCATACTATGCATATGCATGCTCAAAGTGGGCCTCAGCCCCAGGCCCAACACCCAGTACAGATGCAGAATCAGTTCCCTCCACAAATTCCAACTACACGTCCAAATCAATCTCATACTATGTTTCCTAACCAGCAACAGCCAGCTTTGTTGCCTTCATCCGTTCAGGGCCAAACTAACCCCCCTCTGCAACAGCAACCAATATATACTCATAATCAACAACCTGGGCAAATTAACCAACGTCCTACATTACAACCCGTTCAACAAATACCTCAGCAGCCGTATGCACAACACCAAATGCCTATGCCACCTCATTTACGACCCCAAGGTCCAGCACATTCATTTCCTAAGCATGCTTATCCGCAGTCACAGGGTAATGCTGCACTATCAAATAGCATTCAGCACAGTCAATCTCAGAATCCTGCAGGAAGGCCTTTAGCTCCTAATCATGCAGGACACCTACAGCCATTTGCACAATCTCCCAATACCATTCCAGTGAGACCTGGGCAAAATGGTGCTGGCTACCTGCCTGAAAATCAGAAATTGTTGGTTGGGACCAATAATCAAGTACAGTTACCTTCTGAATTGCAGTCTAGGGCACCCGAATCAATTGATAGACAAGGTGATGTTGTTGAGCAACAAACTGACTCTGCCTCTGGGAAACAGGGTAAATTTTTTAAAGATTTGGACATAGTGTCTGGATCAGCAATTGAGTTGAAATCTGAAAAAGTTGAAACAGATTTGAAACCAGTTGAGGCTGGGAATAAGCAAAATAATGAAGATCCACACTCTCTGAAGACTTCAGTACCAAATGGCAATGCATTAGAAAATAGTGATTCTGTGAATAAGAATCTTGGGATGGGGGAGTCTGCTGAAAGCAATTGGAAGCCCTCAATTGGTAATAAATCAGTTGGTTCAATGCATGAGGTTCAAAATGATAGTAATGAGCATTCTGTCCAAGGCAATGAATTTCAAGATGGACATCCACCGAAGACAGAGACAAAACTCCCTGATTCAGAATCTGATAAATTGGGTAATGATGATAATCCCGCACATTCTGTCTCTCAAAGCAACGGGGGTTTTGCCCAGCTGTCTCATACAGCCACTTTTTCTGATCAGAGTAAGCATCAGCAACAAATGATTAATTATGGGCCTCCTTCTGTCCAGCAGAGATCTTCTGCAATGTTAGCATCACAATTGCCACATCCAACAGTTCCTAATCAGTTACTGTCTTCAGAGCACTCTTCAGCCCTTGTTAGGAATCATGGATCTGCCCATGCTCATCATTCAGGACAGCCCTTAACAGAGAATTTTCCACAAACCATGTTTAAGCAACAGCAAGATTCTGACATCCAATTTAATAATCCAGGGCGGAGCTTTCAATCTCAGTCTCTTGGACCCCCACGACCATTTAACCAAGTCCATGAGCCTCCTTTTCATGCTGGAGCATCCAATTTGTCTCGCCTTGGAGGGCCTCAATTTGGTGCACCACTTCCTGGAGATATGCATGGTCGAATGACAGCCAATGTACCCCCACATGCCCCTGAAGGTTTTGGTTTGCAGGATGGAAGGTTCAAACCTTTCCATGTGCCAAATCAACAAAATATTGATAGAAGAGAGTTTGATGATGATCTTAAGAAATTTTCTAGGATGCCTTTGGATGCTGAGCCAGTTTCAAAATTTGGAAATTTTTCATTAGGGGCACATGAAGCTGGAAAGAGACCGGTTGGTATTCATGACAATGTCATTAAGAAATTAGGTTCTACTCTTCATCCTGGTTATCTTGGACCAGGTCCTGGATATGGGAGACATCATATGGATGGTATGGCTCCAAGAAGTCCTGTTGGTGAATATGCTGAGATGTCATCCCGGAGATTGGGGCCCCACTCTGGCAGTCTTGTTGGTAAGTCAGGTATAGATGATTTTGATGGCAGAGTTGCACGTCATTTTGGTGATTTCCGTGATAGTCGATTTCCTCGTTTGCCTAGCCATTTACATGGTGATGAATTTGATGGTTTTGGTAACTTTCGAATGGGTGAACATCCAAGGAGTGGTGATTTCATTGGTCAAGATGAATTTCCTGGCCATTTTAGGAGAGGTGAACATTTAGGTCCACATAATATTCCTAGACATTTACAGCTCGGGGACCCTGTTGGTTTTGGTGCCCATCCTGGTCATATGAGAGCAGTTGAACTTGGTGGTTTCCGTAGTTTTGAATCTTTCAACAAAGGCAACCGGCCAGGTCATCCACAACTTGGTGAGCCTGGGTTTAGGAGCAGCTTCTCTCTTGCAGGATTTCCTAATGATGCTGGATTTTTATCAGGAGATATAAGATCATTTGATAATTTGAGGAGAAGGAAGGCTTCTAGCATGGGGTGGTGCAGGATATGTAAAGTTGACTGTGAAACAGTAGAAGGTTTGGACTTGCATTCGCAAACAAAGGAGCACCAGATGATGGCCATGGATATAGTTAAAACAATCAAACAAAATGCAAAGAAACAGAAATTAATACCCAGTGAACAAGGCTCTGTTGATGAAGGAAATAAGATGCACAATGCTGTTTTTGAGGGTCGAGGAAATAAGCATTAA 3963 0.4232 MGFDNECIVNIQSLAGEYFCPVCRLLVFPNEALQSQCTHLYCKPCLTYVVSTTRACPYDGYLVTEADSKPLTESNKALAETIGKIAVHCLYHRSGCTWQGTLSECTSHCSGCAFGNSPVVCNRCGIQIVHRQVQEHAQNCPGVQGQVQQVAITQDPSATSAVASTDQNQTTAPVAATASQALTSQTAVTTMPGQVSNQLPNSASQTQAVVQPTAEQWYQQQQQYQQYYQQYPGQDPYQQQYQHYYPYQQSGVPQYQQAYGQPQPQAQSQPQPQTQHQSQPQLQPQPQAQGLSQPPSHIQAPVAPSSQNQMQVQQQPQQLQPAVQPHGQTNHAPGHGQALPQAQTQPYPYPQVQPHSVQPQPQQHMQVPPYQQPLPQMQHSQPQIQQPVQKYPVPQPQVHPQLQPNAPVQHVSQLPMPPHQPVTPNVQPQVQSATSHSVTGHHSYPQPLPHPNMQPGIPHHTMHMHAQSGPQPQAQHPVQMQNQFPPQIPTTRPNQSHTMFPNQQQPALLPSSVQGQTNPPLQQQPIYTHNQQPGQINQRPTLQPVQQIPQQPYAQHQMPMPPHLRPQGPAHSFPKHAYPQSQGNAALSNSIQHSQSQNPAGRPLAPNHAGHLQPFAQSPNTIPVRPGQNGAGYLPENQKLLVGTNNQVQLPSELQSRAPESIDRQGDVVEQQTDSASGKQGKFFKDLDIVSGSAIELKSEKVETDLKPVEAGNKQNNEDPHSLKTSVPNGNALENSDSVNKNLGMGESAESNWKPSIGNKSVGSMHEVQNDSNEHSVQGNEFQDGHPPKTETKLPDSESDKLGNDDNPAHSVSQSNGGFAQLSHTATFSDQSKHQQQMINYGPPSVQQRSSAMLASQLPHPTVPNQLLSSEHSSALVRNHGSAHAHHSGQPLTENFPQTMFKQQQDSDIQFNNPGRSFQSQSLGPPRPFNQVHEPPFHAGASNLSRLGGPQFGAPLPGDMHGRMTANVPPHAPEGFGLQDGRFKPFHVPNQQNIDRREFDDDLKKFSRMPLDAEPVSKFGNFSLGAHEAGKRPVGIHDNVIKKLGSTLHPGYLGPGPGYGRHHMDGMAPRSPVGEYAEMSSRRLGPHSGSLVGKSGIDDFDGRVARHFGDFRDSRFPRLPSHLHGDEFDGFGNFRMGEHPRSGDFIGQDEFPGHFRRGEHLGPHNIPRHLQLGDPVGFGAHPGHMRAVELGGFRSFESFNKGNRPGHPQLGEPGFRSSFSLAGFPNDAGFLSGDIRSFDNLRRRKASSMGWCRICKVDCETVEGLDLHSQTKEHQMMAMDIVKTIKQNAKKQKLIPSEQGSVDEGNKMHNAVFEGRGNKH 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00094 1320 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 1A-LIKE 1 1319 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 715 785 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 552 635 - -
Cca04g00094 1320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 118 IPR013083 -
Cca04g00094 1320 SUPERFAMILY RING/U-box 13 73 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 483 537 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 902 927 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 658 680 - -
Cca04g00094 1320 ProSiteProfiles Zinc finger RING-type profile. 20 59 IPR001841 -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 255 392 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 706 817 - -
Cca04g00094 1320 SUPERFAMILY TRAF domain-like 84 141 - -
Cca04g00094 1320 ProSitePatterns Zinc finger RING-type signature. 37 46 IPR017907 -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 425 442 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 786 805 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 577 602 - -
Cca04g00094 1320 MobiDBLite consensus disorder prediction 255 450 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00094 - - gmx:100814445 2018.43