Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00093 ATGACGAAGCTTGCAGGATATTCCCTGGCCGTTTCATTTGCTCCCATAAGTTATAATTTAGTTAAAAACAATTGCAGATTCACGATAGGTATATCGCGTAGGAACAAATGCAGCTCTAGGTTATTTTCCATTCATGCCCAGAAAGAACAATTGCATGAGAAACCTGGGGTGGTTGGCAGATACTATTTTCCTCCTTGGTTTAGTGTTGCTCCAATGATGGACTggacagaccatcactataggactctagcacgcctcatatcaaaacattcttggctgTACACTGAGATGCTTGCAGCTGAAACAATTGTTCATCAGAAGGACAATCTGGACAGATTCTTGGCATATTCTCCAGACCAACATCCCATTGTGCTTCAAATTGGAGGGAGTAATATAGAAAGTTTGGCTAAAGCAACTGAACTTGCTAATACTTATTGCTATGACGAGATCAACTTAAACTGTGGATGCCCTAGTCCAAAAGTTGCCGGGCATGGGTGTTTTGGTGTGAGCCTTATGCTTAACCCCAAGTTTGTTGCTGAGGCCATGTCAGCAATTGCTGCCAGCACAAATGTACCTGTCAGTGTCAAATGTCGAATTGGTGTGGATGATCATGATTCTTACCATGAGCTGTGTGATTTTATATACCAGGTTTCTTCTCTATCACCCACTAAGCATTTCATAATTCACTCAAGGAAGGCACTACTCAATGGCATTAGCCCTGCTGAAAATAGGAGTATTCCTCCGTTAAAGTATGAATACTTCTATGGCCTCTTACGTGACTTTCCTGACCTAACATTTACAATCAATGGTGGTATTACTAGTGTTGATGAGGTCAGTGCAGCTCGAGAAGCTGGGGCTCATGGTGTTATGGTTGGACGTGCAGCATACAACAACCCTTGGCATATTTTGGGACATGTTGATGCTACAATTTATGGTACACCAAGGTGTGGTCTTACACGTCGTCAGGTCCTTGAAAAATATCTAGCCTATGGGGACTCGGAGTTGGGAAAATATGGACATAAGCCAACTGTGCGGGATATTGTGAAGCCTTTACTCCATCTTTTCCATTCGGAACCTGGGAATGGACTTTGGAAGCGCAAAGCTGATGCTGCTTTCAGAAATTGCACGACAATCGAATCATTTTTTGAAGAAACCCTTGTAGCAATTCCCGACTCAGTATTGGATTCGCCTGTTGCGGAACCACCACCCGGCCGTGGAGATCTTTTTGCTAACATACACAATTTATTGCCTCCTTCATACAGAAAAAGGGAAGAAGCAGTAACCATCTGTGCTTAG 1296 0.4113 MTKLAGYSLAVSFAPISYNLVKNNCRFTIGISRRNKCSSRLFSIHAQKEQLHEKPGVVGRYYFPPWFSVAPMMDWTDHHYRTLARLISKHSWLYTEMLAAETIVHQKDNLDRFLAYSPDQHPIVLQIGGSNIESLAKATELANTYCYDEINLNCGCPSPKVAGHGCFGVSLMLNPKFVAEAMSAIAASTNVPVSVKCRIGVDDHDSYHELCDFIYQVSSLSPTKHFIIHSRKALLNGISPAENRSIPPLKYEYFYGLLRDFPDLTFTINGGITSVDEVSAAREAGAHGVMVGRAAYNNPWHILGHVDATIYGTPRCGLTRRQVLEKYLAYGDSELGKYGHKPTVRDIVKPLLHLFHSEPGNGLWKRKADAAFRNCTTIESFFEETLVAIPDSVLDSPVAEPPPGRGDLFANIHNLLPPSYRKREEAVTICA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00093 431 SUPERFAMILY FMN-linked oxidoreductases 66 367 - -
Cca04g00093 431 PANTHER FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN 59 427 IPR004653 GO:0002943|GO:0017150
Cca04g00093 431 CDD DUS_like_FMN 67 300 IPR035587 -
Cca04g00093 431 Pfam Dihydrouridine synthase (Dus) 69 375 IPR035587 -
Cca04g00093 431 Gene3D Aldolase class I 63 305 IPR013785 -
Cca04g00093 431 PANTHER TRNA-DIHYDROURIDINE SYNTHASE 59 427 - -
Cca04g00093 431 Gene3D - 317 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00093 Cca-Chr4 824660 830393 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00093 K05539 - gmx:100779457 812.757