Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00081 ATGTCGTTCCGATCGGAAAATCAGAACCCAAACCCTAACCCAAACCCAAACCCTAGTCCCACTCCTCCGTCGAAGAAGCGATGGTCGGACATATGGTTAAGATCAAAACCCCTAACCGAAATGGTGATGGCGATGAAGCTTCAGTCCCCCCTCGCCATCGCCGACAGAACCCTCCTCCTCTCCGACGAGCTTCTCCTGAAAATCCTCGCCGCGATCTCCGATTCCCAAACGCAGCGCAACGCCAACTCACTCGTCTGCAAGCGGTGGCTCAACCTCCAGGGCCGCCTCCTCCGCTCGCTCGCAATCTCCGACTGGAACTTCCTCCTCTCCGGCAGACTCATCCACCGCTTCCCAAATCTCAACCACGTCGACCTCACCTCCGCCACCTTCGTCTCCCCTCGCAACTCCGGCATCCTCCTCAGCAACCGCGTCCTCACCGTGCACCTCACCGCAGCCACTTCCCCCAACTGGTGCTTCTGCGAGGACGCCATGCTCCCCGTCGAGGTCATCGACACCGGCCTcgcctccctcgccgccgcctgccccaacctccgccgcctccgcctcatcggcgcctccgAGATGGGGGTCCTCAGCGTCGCCGAGGACTGCCCCACGCTGCAGGACCTGGAGCTCCAGCGCTGCAGCGATGCCGTCTTGCGCGGCATCGCCGCCTGCCGGAATCTCCAGATCCTGAAACTCGTGGGACATGTGGATGGATTCTACAATTCGGTGGTTTCCGATATTGGGTTGACCATTCTGGCTCAGGGGTGTAAGCGTCTTGTGAAATTGGAGCTTAGTGGCTGTGAAGGGAGCTTTGATGGGGTTAAGGCAATTGGGAAATGCTGCCAAATGTTGGAGGAATTGACTTTTTCTGATCACAGAATGGATGATGGGTGGCTCGCGGCTCTCTCATTCTGTGAGAATTTGAAGACTTTGAGGATTGTGTCTTGCAAGCGAATTGATTCCAATCCGGGTATGGAGGAGTATTTGGGTTCTTGCTCTGCGCTTGAACGCTTGCATTTGGAGAAATGTCTGTTGCGGGATAAGAAGAGCGTTGCGGCTTTGTTCTCTGTGTGCAGGAATGTTAGGGAGGTTGTTCTTCAGGATTGCTGGGGTTTCGATGATGGCATTTTCAGTCTTGCAATAACATGCAGGCGCGTGAAATTGTTATACTTAGAAGGTTGCTCATTGATAACAACAGATGGTTTGGAGTCTGTGATTCATTCATGGAAGGAGCTTCAACGCCTTAGAGTAGTGTCATGTAAGAATATAAAGGATAATGAGATATCTCCTGCGCTCGCAACCTTGTTTACCACTCTCAAGGAGTTGAGATGGAGCCCAGATACCAAATCACTTCTTCCTTCAAGTCTTGCGGGGACAACCATGGGAAAGAAAGGTGGTAAATTTTTCAGAAGGACACGATAA 1428 0.5049 MSFRSENQNPNPNPNPNPSPTPPSKKRWSDIWLRSKPLTEMVMAMKLQSPLAIADRTLLLSDELLLKILAAISDSQTQRNANSLVCKRWLNLQGRLLRSLAISDWNFLLSGRLIHRFPNLNHVDLTSATFVSPRNSGILLSNRVLTVHLTAATSPNWCFCEDAMLPVEVIDTGLASLAAACPNLRRLRLIGASEMGVLSVAEDCPTLQDLELQRCSDAVLRGIAACRNLQILKLVGHVDGFYNSVVSDIGLTILAQGCKRLVKLELSGCEGSFDGVKAIGKCCQMLEELTFSDHRMDDGWLAALSFCENLKTLRIVSCKRIDSNPGMEEYLGSCSALERLHLEKCLLRDKKSVAALFSVCRNVREVVLQDCWGFDDGIFSLAITCRRVKLLYLEGCSLITTDGLESVIHSWKELQRLRVVSCKNIKDNEISPALATLFTTLKELRWSPDTKSLLPSSLAGTTMGKKGGKFFRRTR 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00081 475 SUPERFAMILY RNI-like 96 236 - -
Cca04g00081 475 PANTHER F-BOX PLANT-LIKE PROTEIN 37 455 - -
Cca04g00081 475 Gene3D Ribonuclease Inhibitor 274 464 IPR032675 -
Cca04g00081 475 Gene3D Ribonuclease Inhibitor 56 273 IPR032675 -
Cca04g00081 475 MobiDBLite consensus disorder prediction 1 27 - -
Cca04g00081 475 SMART LRR_CC_2 258 282 IPR006553 -
Cca04g00081 475 SMART LRR_CC_2 204 226 IPR006553 -
Cca04g00081 475 SMART LRR_CC_2 334 359 IPR006553 -
Cca04g00081 475 SMART LRR_CC_2 385 410 IPR006553 -
Cca04g00081 475 SMART LRR_CC_2 307 333 IPR006553 -
Cca04g00081 475 SUPERFAMILY RNI-like 242 445 - -
Cca04g00081 475 PANTHER UNCHARACTERIZED 37 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00081 Cca-Chr4 726616 729327 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00081 K10268 - gmx:100812193 746.888