Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00070 ATGGATCCAGATCAGGTCTCTTCAAGAACACGGAAGCTCAAGTACCCTCCCAAACCTCCGCCGAAGCCCAAACTCCGAAAGCCCAAAGCCGAAGCCAACGATAAACAAAAGGAAGATAGCGCACAGGCTCGATCTCTCTTGCGTCGATGTGAGAGTCTTGCAAGACCGGAGCCTAAAGTGGAAAGAAAATCGAGCGCGGAAGTTGCATTTAGTCCTGCAGTTTCATCTCCTTCCCTCAGGACATATGGCACAAGCAATGGCTCACCATCTAAACATTTTTCTAATGAGCAAACTCTTTTAATACGTTCTTCGGCTGCTACTGAGGAGGATCAAAATGATTTTCGTATGATAGATGTTACTGATGATGCCACCAATGCATCAGCCACCAATGCATCAGCCACCAGAAACAAAGGAGAGTACAAGGAACTATGGGACTATGACCACTCTTACTATCCTACTACTCTTCCACTGAGGAAGCCAAATTCTGGAGATCCAGAAATTCTTGATGAGGAAGAATTTGGGGAAGCTGCTGCTAGTGTGGAGTATGATGAGAATGCTGTTAATTCTGCTGCAGAACTCGGGCTCTTGGAGAAGAGTGAGCAACAAACGATGCTTTTCTTTAAGTTTCCTGCTGCTCTGCCTTTGGAGAAGCAGAATAATAAGGGCAAAGAGAAAATTGGTACATCAACAGTAACGGGAGAGCCCACAAAGTCTAAGGGAATTGCTTTGGAAGAGTTGCCAAGGGGACATATGGGCAAAATGCTGGTGTACAAGAGTGGAGCAATCAAACTAAAACTAGGAGAAACTCTATTCGATGTTTCTTCAGGTACAAATTGTGTATTTGCTCAAGATATTGTGGCAATGAACGCGGCACAGAAACAGTGTTGCAATCTTAGCAAGATTAATAAAAGGGTTGTTGTGGTTCCTGATCTTGATTCAATTGATCTGTAA 951 0.4406 MDPDQVSSRTRKLKYPPKPPPKPKLRKPKAEANDKQKEDSAQARSLLRRCESLARPEPKVERKSSAEVAFSPAVSSPSLRTYGTSNGSPSKHFSNEQTLLIRSSAATEEDQNDFRMIDVTDDATNASATNASATRNKGEYKELWDYDHSYYPTTLPLRKPNSGDPEILDEEEFGEAAASVEYDENAVNSAAELGLLEKSEQQTMLFFKFPAALPLEKQNNKGKEKIGTSTVTGEPTKSKGIALEELPRGHMGKMLVYKSGAIKLKLGETLFDVSSGTNCVFAQDIVAMNAAQKQCCNLSKINKRVVVVPDLDSIDL 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00070 316 MobiDBLite consensus disorder prediction 69 93 - -
Cca04g00070 316 PANTHER DNA-DIRECTED RNA POLYMERASE III 1 316 IPR007811 GO:0003677|GO:0005666|GO:0006383
Cca04g00070 316 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC4-RELATED 1 316 - -
Cca04g00070 316 MobiDBLite consensus disorder prediction 24 64 - -
Cca04g00070 316 MobiDBLite consensus disorder prediction 1 93 - -
Cca04g00070 316 Pfam RNA polymerase III RPC4 217 310 IPR007811 GO:0003677|GO:0005666|GO:0006383
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00070 Cca-Chr4 625800 628889 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00070 K03026 - gmx:100787575 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00070 04 625800 628889 Cca04g00070 04 625800 628889 ECH