Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00066 ATGGAGAGTGCTTTTGCGAGCGCTTCTGCGATTTCAGACCAGAGGCAAAAGATAGAGCAGTATAAGAGCATACTCTATGCTGTCATTTCGTCTAATGACATTGTTCAGGCTAGGAAATTTATAGATCACATGTTATCAGATGATGTTCCATTAGTAGTGTCGCGGCAGCTTTTGCAGACTTTTGCTCAGGAGTTGGGGAGATTGGAGCCTGAGACGCAGAAAGAGATTGCTCATTACACCCTTGCCCAAATTCAGCCTCGTGTTGTGTCGTTTGAAGAGCAGGTTTTAGTTATTAGAGAGAAACTTGCTGAGCTTTATGAATCTGAGAAGCAATGGTCAAAAGCAGCTCAAATGCTCAGTGGTATTGACCTAGATTCAGGAATGAGGGTGATTGATGATGCGTTCAGGTTGTCAAAGTGTGTCCAGATTGCTTGTTTATACCTTGAGGATGATGACGCCGTCAATGCTGAAGCTTTTATAAATAAAGCATCATTCTTGGTTAGCAACAGTCAGCATGAAGTACTGAATTTGAAGTACAAGGTTTGCTATGCGAGGATCTTAGATTTGAAGAGGAAGTTTTTGGAAGCAGCATTACGGTATTATGATATATCTCAAATCGAGAAAAGACAAATAGGAGATGAGGAGATTAATGAGGAAGCACTTGAACAAGCTTTATCTGCTGCTGTTACATGTACCATATTGGCAGCTGCAGGACCTCAACGGTCCCGTGTTCTTGCCACTTTGTACAAGGATGAGCGGTGTTCAAAGTTGAAGATCTATCCAATATTGCAGAAGGTGTATTTGGAGAGAATTCTCAGAAAACCAGAAATTGATGCTTTTGCAGAAGAATTGAAACCACATCAGAAAGCTCTTCTTCCAGACAATTTCACTGTGCTGGACCGTGCTATGATTGAGCATAATCTTCTGAGTGCAAGCAAACTTTATACTAATATCAGCTTTGATGAGCTAGGCACGCTGTTGGGGATCCCACCTCATAAGGCTGAGAAAATTGCATCAAGAATGATTTACGAGGATAGGATGAGGGGATCTATCGATCAGGTGGAAGCTGTCATACATTTTGACGATGACACTGAAGAATTGCAGCGATGGGACCAACAGATTGTGGGCCTATGTCAGGCCCTGAACGATGTTTTGGATAGCATGGCCAAGAAGGGTTTTCCAGTTCCTGTTTAA 1194 0.4229 MESAFASASAISDQRQKIEQYKSILYAVISSNDIVQARKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIAHYTLAQIQPRVVSFEEQVLVIREKLAELYESEKQWSKAAQMLSGIDLDSGMRVIDDAFRLSKCVQIACLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLKYKVCYARILDLKRKFLEAALRYYDISQIEKRQIGDEEINEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIPPHKAEKIASRMIYEDRMRGSIDQVEAVIHFDDDTEELQRWDQQIVGLCQALNDVLDSMAKKGFPVPV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00066 397 PANTHER COP9 SIGNALOSOME COMPLEX SUBUNIT 4-LIKE 1 397 - -
Cca04g00066 397 ProSiteProfiles PCI domain profile. 192 365 IPR000717 -
Cca04g00066 397 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 1 397 IPR040134 -
Cca04g00066 397 Gene3D - 291 369 IPR036388 -
Cca04g00066 397 SMART PINT_4 294 377 IPR000717 -
Cca04g00066 397 Pfam PCI domain 268 361 IPR000717 -
Cca04g00066 397 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 294 377 - -
Cca04g00066 397 SUPERFAMILY "Winged helix" DNA-binding domain 292 366 IPR036390 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00066 K12178 - gmx:100819593 756.518