Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00062 ATGAAACCTGATGTTGAGAACGCTACACAAAGTCCGTTACTGAATCCTCCAAGTGATAGGGAAATTGGAAGGAGAGCACAAAAGGGTACCCTTGTTTCCATTGCCTCCATCGTTTTCCTAATTTTGTCATTGGTTGCACTTGCACTCATCATCATAAACCATGAACCCTTAGAAAAGGACCAGAAAAACAATGTTAAGTCCCTGCCATTACGTCCTAGAGGGGTTGCTGAGGGGGTTTCAGCAAAGTCAAACCCTTATCTTTCAAACAAAGCTTCTTATAATTGGACAAATGCCATGTTATCTTGGCAAAGAACAGCTTTCCATTTTCAACCTCAAACCAACTGGATGAACGATCCTAATGGTCCATTGTTTTACAGTGGGTGGTACCATATATTTTACCAATACAATCCTGATTCAGCTGTGTGGGGCAACATAACATGGGGCCACGCTGTATCGAGGGACATGATTCACTGGCTCTACCTTCCCATTGCGTTGGTTCCAGACACGTGGCATGATATCAACGGGGTATGGTCAGGATCAGCCACCCTTTTGCCAGATGGCAAAATCGTAATGCTCTACACGGGTAACACGGCTCAAAACGTGCAGGTCCAAAATCTTGCCTACCCCGCCAACCTATCTGATCCTCTCCTCCTTGATTGGGTCAAATACGCTGATAACCCGGTCTTGGTGCCTCCACCGGGCATTGGGCCAAAAGATTTTCGTGACCCAACCACTGCGTGGATTGGGCCGGATGAGAAATGGAGGGTCACTATTGGGTCAAAGGTCAACAAGACGGGTCTTTCATTGGTTTATAGAACCAAAGATTTCATCCACTACGAGCTCAGTGATCACTATTTGCATGCAGTCCCGGGTACGGGTATGTGGGAGTGCGTGGACTTTTTCCCGGTTTCGGTAAATGGGCCTAACGGTTTGGACTCATCTGTAAATGGGCCTGAAGTGAAACATGTATTGAAGGCTAGTTTGGATGACACTAAGGTGGATCACTATGCAATTGGGACCTACTTCGTTGAAAATGATACATGGGTGCCCGACAACCCGCACGAGGATGTGGGTATCGGGTTGAAGTTGGACTATGGGAGATACTATGCGTCAAAGACATTTTATGACCAACAGAAACAGAGAAGGGTCCTGTGGGGTTGGATTAATGAATCAGATAGTGAAACTGCTGACTTGAAAAAGGGTTGGGCATCTCTCCAGACAATTCCTAGAACAGTGTTGTTTGACAAGAAGACTAGAACTAATCTGCTGCAGTGGCCAGTGGAGGAAGTAGACAGCTTAAGACTAAGCAATTTTGAATTTGAAGAAGTTGTGGTTAAACCTGGCTCAGTCGTGCCACTGGACATAGGTCCAGCCACACAGTTGGACATATTTGCTGAATTTGAGATCGAATTTTTGGCATCCAAAGGGATTGGCAAGGGCAATGTAGGCTGTGGAAGTGGAGCTGTTGACAGAAGTGCTTTGGGACCATTTGGCATTCTGGCTATTGCAGATGACCAACTTTCTGAATTAACACCAATTTATTTCCATCTTTCTAGTATTACTAGTGATGCCTCTTTAACCACTTCCTTCTGTGTTGATGAAACAAGGTCATCAATGGCACCAGATGTTTCAAAGCTCGTTTTTGAAAGCAAAGTTCCAGTTCTCAGTGATGAAAAATTATCAATGAGGGTATTGGTTGACCATTCAATCATTGAGAGCTTTGCTCAGGGAGGGAGAACTGTGATCTCATCTAGAGTTTATCCAACAGAAGCAATATATGGAGCTGCAAGATTGTTTCTGTTCAACAATGCAACGGATATAAACATCAAGGCCTCGCTCAAGATTTGGCAATTGAACTCTGCTTTTATACGCCCCTTTCCCTTTGACTAG 1890 0.4466 MKPDVENATQSPLLNPPSDREIGRRAQKGTLVSIASIVFLILSLVALALIIINHEPLEKDQKNNVKSLPLRPRGVAEGVSAKSNPYLSNKASYNWTNAMLSWQRTAFHFQPQTNWMNDPNGPLFYSGWYHIFYQYNPDSAVWGNITWGHAVSRDMIHWLYLPIALVPDTWHDINGVWSGSATLLPDGKIVMLYTGNTAQNVQVQNLAYPANLSDPLLLDWVKYADNPVLVPPPGIGPKDFRDPTTAWIGPDEKWRVTIGSKVNKTGLSLVYRTKDFIHYELSDHYLHAVPGTGMWECVDFFPVSVNGPNGLDSSVNGPEVKHVLKASLDDTKVDHYAIGTYFVENDTWVPDNPHEDVGIGLKLDYGRYYASKTFYDQQKQRRVLWGWINESDSETADLKKGWASLQTIPRTVLFDKKTRTNLLQWPVEEVDSLRLSNFEFEEVVVKPGSVVPLDIGPATQLDIFAEFEIEFLASKGIGKGNVGCGSGAVDRSALGPFGILAIADDQLSELTPIYFHLSSITSDASLTTSFCVDETRSSMAPDVSKLVFESKVPVLSDEKLSMRVLVDHSIIESFAQGGRTVISSRVYPTEAIYGAARLFLFNNATDINIKASLKIWQLNSAFIRPFPFD 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00062 629 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 52 626 - -
Cca04g00062 629 SUPERFAMILY Arabinanase/levansucrase/invertase 101 427 IPR023296 -
Cca04g00062 629 SUPERFAMILY Concanavalin A-like lectins/glucanases 426 622 IPR013320 -
Cca04g00062 629 Pfam Glycosyl hydrolases family 32 C terminal 429 617 IPR013189 -
Cca04g00062 629 CDD GH32_Fruct1-like 114 413 - -
Cca04g00062 629 Gene3D Glycosyl hydrolase domain; family 43 113 437 IPR023296 -
Cca04g00062 629 Pfam Glycosyl hydrolases family 32 N-terminal domain 108 426 IPR013148 -
Cca04g00062 629 Gene3D - 438 618 - -
Cca04g00062 629 ProSitePatterns Glycosyl hydrolases family 32 active site. 108 121 IPR018053 GO:0004553|GO:0005975
Cca04g00062 629 Pfam Beta-fructofuranosidase, N-terminal domain 23 100 IPR021792 GO:0004564
Cca04g00062 629 MobiDBLite consensus disorder prediction 1 22 - -
Cca04g00062 629 SMART glyco_32 108 578 IPR001362 GO:0004553|GO:0005975
Cca04g00062 629 PANTHER ACID BETA-FRUCTOFURANOSIDASE 4, VACUOLAR 52 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00062 Cca-Chr4 565760 570206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00062 9 626 Glycoside Hydrolase AT1G12240 58.464 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00062 K01193 - gmx:100814788 1126.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00062 04 565760 570206 Cca04g00062 04 565760 570206 ECH