Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00059 ATGGGTTTGGCACAAAGGTGGTTGTTGATAGTGGTGGGTAGCATATTGAGTGGGAGAGGGTTGACGTTGAGGCATAACTATGGAGAAGCATTGTCAAAGAGCATATTGTTCTTTGAAGGCCAGAGATCAGGGAAATTGCCACCAACACAGAGGATGAATTGGAGGAAGGATTCTGCACTTCAAGATCTCTATATACTTCCTCCTTCTAATGTCTCTCCTCTCCCTCCTAAAGTTGACTTGGTTGGTGGTTACTACGATGCTGGTGACAACATGAAATTCAACTTCCCTATGGCATTTTCAACGACGATGCTGGCGTGGAGTGTAATAGAGTTCGGAAAATTCATGGGTCCAGAGCTGAAACACTCACTAGACGCTATTCGTTGGGGCACGGACTATTTGCTGAAAGCCACTAGCATCCCAGGGTTTGTGTTTGCACAAGTTGGTGACCCTTATGCTGATCACAATTGCTGGGAGAGACCCGAAGACATGGACACACCAAGAACTGCTTTTGCTGTTACCAAGGACTACCCTGCCTCTGAACTTTCTGCAGAGATTGCAGCAGCACTTGCAGCCTCTTCTATTGTATATAGGAAATACCATCTCTCTTATTCTTCAAGACTTCTCAAAAGGGCTACAATGGTTTTTGACTTTGCTGATAAATACAGAGGATCATACAATGACAGCCTCGGACACTGGGTATGCCCATTCTACTGTGATTTTAGTGGCTACCAGGACGAATTGGTGTGGGGAGCAGCATGGTTGTTGAAGGCTACTAAGCTCCCTTATTACTTGGATTACATTGCCAAAAACATTCATAATGTGAAAAACTATGGTGAATTTGGATGGGACTCAAAGGACGCTGGCATCAACGTGCTACTTTCCAAGCTTCTAATGAATAGTAGCTTTAATTCTAAGCCGTTCAGCCTCAACGCAGACAAGTTTGTCTGTTCAGTGCTACCTGAATCACCTTCAGTATCAGTCTCATACTCTCCAGGTGGGCTTCTATTCAAGCCTGGCGGGAGTAATTTGCAGCATGCAACAGCATTCTCATTTCTGTTTCTGGTTTATGCTGGCTATTTGAAAAAGACTAATCAACAGATTGACTGTAGTGGTAATGTTTTGGCTTCTCCAACGCGACTCAAACAAATAGCAAGAAGCCAGGTGGATTACATACTTGGAAGCAATCCAGAGAATATGTCATACATGGTTGGATACGGAGGAAAATATCCTGAAAGAATACATCACCGTGCGTCGTCATTGCCATCCGTAGATGAGCACCGTGGCCACATTGGTTGCAAAGAAGGATCCTTTTATTTTCAAACCCAAAATCCAAACCCCAACTTGCTTTCAGGAGCTGTTGTGGGTGGACCTGATATTAAGGACTCATATGCAGATTCTCGAGCAGATTTTGCACACTCTGAACCTACAACATATATCAATGCACCTCTTGTCGGGGTTTTAGCTTACTTCAAATCTCATCCATCCTAG 1488 0.4402 MGLAQRWLLIVVGSILSGRGLTLRHNYGEALSKSILFFEGQRSGKLPPTQRMNWRKDSALQDLYILPPSNVSPLPPKVDLVGGYYDAGDNMKFNFPMAFSTTMLAWSVIEFGKFMGPELKHSLDAIRWGTDYLLKATSIPGFVFAQVGDPYADHNCWERPEDMDTPRTAFAVTKDYPASELSAEIAAALAASSIVYRKYHLSYSSRLLKRATMVFDFADKYRGSYNDSLGHWVCPFYCDFSGYQDELVWGAAWLLKATKLPYYLDYIAKNIHNVKNYGEFGWDSKDAGINVLLSKLLMNSSFNSKPFSLNADKFVCSVLPESPSVSVSYSPGGLLFKPGGSNLQHATAFSFLFLVYAGYLKKTNQQIDCSGNVLASPTRLKQIARSQVDYILGSNPENMSYMVGYGGKYPERIHHRASSLPSVDEHRGHIGCKEGSFYFQTQNPNPNLLSGAVVGGPDIKDSYADSRADFAHSEPTTYINAPLVGVLAYFKSHPS 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00059 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 463 481 IPR033126 -
Cca04g00059 495 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 390 416 IPR018221 -
Cca04g00059 495 PANTHER ENDOGLUCANASE 12 494 - -
Cca04g00059 495 SUPERFAMILY Six-hairpin glycosidases 25 492 IPR008928 GO:0005975
Cca04g00059 495 Pfam Glycosyl hydrolase family 9 27 487 IPR001701 GO:0004553|GO:0005975
Cca04g00059 495 Gene3D - 22 495 IPR012341 GO:0005975
Cca04g00059 495 PANTHER ENDO-1,4-BETA-GLUCANASE 12 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00059 Cca-Chr4 532495 535612 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00059 25 495 Glycoside Hydrolase AT1G70710 60.842 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00059 K01179 - gmx:100775752 857.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00059 04 532495 535612 Cca04g00059 04 532495 535612 ECH