Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00044 ATGAGTAACATTCACCGCACGCGCTTCCCACTCTCCATCACCAAGCTCCTCTTCTTCACGCTAATGCTCCTCAGCCTCATTCTTCTCTTCCTATTCGGATCTCCACCCTCCACCGCCGCCTGGGAGAGCTCCGTACGCCAATCCGCCACCCCTGCCTCCTCCAAAGCACTCACCGTCCTCGTCACGGGAGCAGCCGGGTTCGTGGGGACGCACGTCTCGATCGCCCTGAAGCGGCGCGGAGACGGCGTGGTGGGCATCGACAACTTCAACAGTTACTACGAGGCTTCCCTGAAGCGCGCTCGCAGCGACCTCCTGGCGCGGCACGGCGTGTTGGTGGTGAACGGCGACATCAACGACGCCTCTCTCCTGAATTCCCTCTTGGAAGTGGTGAAATTCAGTCACGTGATGCACCTGGCGGCCCAGGCCGGGGTTCGCTACGCCATGATAAACCCTAAGTCGTACGTCCACAGCAACATCGCGGGCCTCGTGAGCGTCCTGGAGGCCTGCAAGAACGCCAACCCCCAGCCCGCTATTGTTTGGGCCTCGTCCAGCTCCGTTTACGGCCTCAATTCGAAGGTTCCTTTCTCAGAAAAAGACCGCACTGACCGCCCCGCTAGTCTCTACGCCGCCACGAAGAAGGCTGGCGAGGAAATCGCCCACTCTTATAACCACATTTACGGGCTTTCCATTACTGGGCTCCGGTTCTTCACTGTTTATGGGCCTTGGGGGCGGCCCGATATGGCCTACTTCTTGTTCACTAAGAATATTTTAAAAGGGAAGCAGGTTGCGGTGTTTGAGGGTCCGAATGGAGGGTCCGTTGCGCGGGACTTTACTTACATTGATGATATTGTGAAGGGTTGCTTGGGGGCGTTGGACACTGCAAGTAAGAGCACTGGGAGTGGGGGAAAGAAGAATGGGCCGGCCCAGTTAAGGGTTTACAATCTGGGCAACACTTCGCCCGTGCCCGTCTCTAAGCTGGTTAGCACATTGGAGAAGTTGCTGAAAGTGAATGCGAAGAAGAAAGTGTTGGCAATGCCCAGCAACGGGGATGTTATTTTGACGCATGCTAATATTACCCTCGCCCGGAACGACCTTGGTTACAGGCCCACCACCGATTTCGAAACCGGCTTGAGCAAATTTGTGCATTGCTCGGTTTAA 1158 0.563 MSNIHRTRFPLSITKLLFFTLMLLSLILLFLFGSPPSTAAWESSVRQSATPASSKALTVLVTGAAGFVGTHVSIALKRRGDGVVGIDNFNSYYEASLKRARSDLLARHGVLVVNGDINDASLLNSLLEVVKFSHVMHLAAQAGVRYAMINPKSYVHSNIAGLVSVLEACKNANPQPAIVWASSSSVYGLNSKVPFSEKDRTDRPASLYAATKKAGEEIAHSYNHIYGLSITGLRFFTVYGPWGRPDMAYFLFTKNILKGKQVAVFEGPNGGSVARDFTYIDDIVKGCLGALDTASKSTGSGGKKNGPAQLRVYNLGNTSPVPVSKLVSTLEKLLKVNAKKKVLAMPSNGDVILTHANITLARNDLGYRPTTDFETGLSKFVHCSV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00044 385 Gene3D - 57 384 - -
Cca04g00044 385 Pfam NAD dependent epimerase/dehydratase family 59 296 IPR001509 -
Cca04g00044 385 PANTHER UDP-GLUCURONATE 4-EPIMERASE 4 5 382 - -
Cca04g00044 385 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 55 382 IPR036291 -
Cca04g00044 385 PRINTS Nucleotide sugar epimerase signature 275 290 - -
Cca04g00044 385 PRINTS Nucleotide sugar epimerase signature 350 367 - -
Cca04g00044 385 PRINTS Nucleotide sugar epimerase signature 85 101 - -
Cca04g00044 385 PRINTS Nucleotide sugar epimerase signature 310 325 - -
Cca04g00044 385 PANTHER EPIMERASE-RELATED 5 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00044 Cca-Chr4 430827 432220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00044 4 380 Miscellaneous Gene Families AT4G00110 70.305 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00044 K08679 - gmx:100819586 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00044 04 430827 432220 Cca04g00044 04 430827 432220 ECH