Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00023 ATGGCGAGAAATGTAATGCACGCGGTTCAGTATGACGCCTATGGCGGAGGTGCCGCTGGATTGAAGCACGTTGAAGTTGGCGTTCCCAGTCCCAACACAAATGAGGTTTTACTGAAAGTGGAAGCGATTAGCATAAATCCCATTGATTGGAAGATTCAGAGTGGTGTTCTGCGCCCTTTGTTTTTACCCAGAACCTTTCCCCACATACCTTGCACTGATGTCGCTGGACAAGTTGTTCAGATTGGACCCCAAGTCACTCATTTCAAAGTTGGCGACAAAGTCCTCGCTAAACTCACTCATCAATATGGAGGTGGACTGGCTGAGTTTGCTGTAGCTAGTGAGAGTGTAACAGCTGCCAGACCATCTGAGGTTTCAGCTGCTGAAGCTGCATCATTACCTATTGCCGGACTCACAGCTCGTGATGTCCTCACTCAAATAGTAGGAGTCAAGCTTGATGGGACTGGCCAGCCCAAGAACATTTTAGTAACTGCTGCTTCAGGGGGTGTGGGTCACTATGCTGTTCAACTAGCAAAACTTGGAAACACCCATGTCACAGCCACTTGTGGGGCTCGTAACATTGACTTTATTAAGGGCTTGGGTGCCGATGAGGTTCTTGACTACAGGACTCCAGAGGGGGCCGCACTGAGGAGTCCATCTGGTAGGAAATATGATGCAGTGATAAATTGCACAACTGGAATACCTTGGTCAACTTTTGATCCTATTTTGAATGAAAGGGGGGTGGTAGTTGATTTAACACCTAATGCAACTTCGTTGATGACTGCTGCCCTGAAGAAACTTACTTTTTCCAAGAAGCGTCTTGTGCCATTTTTAGTGGATGTCAAGCGGGAAGGCCTGGAATATCTAGTTCAATTACTGAAGGATGGGAAACTCAAGTCTGTTATTGACTCCAGGTTTCCTTTGAGCAAAGCTGAAGATGCTTGGGCTAAGAGCATTGATGGCCATGCTACTGGAAAAATCATTGTGGAGCCATAG 993 0.4683 MARNVMHAVQYDAYGGGAAGLKHVEVGVPSPNTNEVLLKVEAISINPIDWKIQSGVLRPLFLPRTFPHIPCTDVAGQVVQIGPQVTHFKVGDKVLAKLTHQYGGGLAEFAVASESVTAARPSEVSAAEAASLPIAGLTARDVLTQIVGVKLDGTGQPKNILVTAASGGVGHYAVQLAKLGNTHVTATCGARNIDFIKGLGADEVLDYRTPEGAALRSPSGRKYDAVINCTTGIPWSTFDPILNERGVVVDLTPNATSLMTAALKKLTFSKKRLVPFLVDVKREGLEYLVQLLKDGKLKSVIDSRFPLSKAEDAWAKSIDGHATGKIIVEP 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00023 330 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 124 278 IPR036291 -
Cca04g00023 330 CDD MDR1 9 328 - -
Cca04g00023 330 SUPERFAMILY GroES-like 5 146 IPR011032 -
Cca04g00023 330 SMART PKS_ER_names_mod 16 328 IPR020843 GO:0016491
Cca04g00023 330 PANTHER ZINC-BINDING DEHYDROGENASE FAMILY OXIDOREDUCTASE 4 330 - -
Cca04g00023 330 Pfam Zinc-binding dehydrogenase 199 328 - -
Cca04g00023 330 PANTHER ZINC-TYPE ALCOHOL DEHYDROGENASE-LIKE PROTEIN C16A3.02C 4 330 - -
Cca04g00023 330 Gene3D - 13 328 - -
Cca04g00023 330 Gene3D - 143 281 - -
Cca04g00023 330 Pfam Alcohol dehydrogenase GroES-like domain 34 101 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00023 Cca-Chr4 245144 250549 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00023 K00224 - gmx:100790762 576.244