Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00021 ATGGCCGAAAATGATTCAAACCCTCCTGGTCCTCCAGGCGCTGCACCGGCGGTGGAGGTTGAAGAGGAAGAGAAAGAGAGGGAGTCGTTGAAGGAGGAGAGCAATAGGGTTTCGGAATGGGAGAGAAAGAGCGTGGAAGAGCTGAAAGAGGTTCTGAGAGAGGAGTTGAAGTCGGAAGGGGAGGTCTCGATCTGGGGAGTCCCTCTCCTGAAGGACGAAAGGAGTGACGTGATCCTCCTAAAGTTTCTGAGAGCGCGAGAGCTGAAAGTGAGGGAAGCTCTTGTGATGATTCAGAACACCCTCAAATGGAGGAAGGACTTCAACATCGACGCCCTCTTGGACGAGGATCTCGGCGATGACCTGGACAAGGTCGTCTTCATGCATGGGCACGGCAGAGAGGGCCACTCCGTCTGTTACAACGTCTACGGAGAGTTCCAGAACAAGGACCTCTACCAAAAGGCCTTCTCCACCCAAGAAAACCGTACCAAGTTTCTCCGCTGGCGGATCCAGCTCTTGGAGCGCAGTATCAGGAACCTCGATTTCTCTCCCGGAGGCATTAACACCGTTTTGCAAGTCAACGACCTCAAAAACTCTCCCGGCCCTGCCAAACGGGAACTTCGACTTGCCACCAAACAAGCTCTGCACTTGCTTCAGGACAACTATCCCGAGTTTGTTGCCAAACAGGTTTTTATCAATGTCCCGTGGTGGTATCTTGCTTTCTACACCATGATCAATCCCTTCTTGACTCAGAGGACCAAGAGCAAGTTTATCTTTGCAGGCCCACTCAAGTCTCCCGACACTCTTTTCAAGTATATTTCTCCCGAGCAAGTGCCCGTTCAGTATGGTGGCCTCAGTGTGGATTTCTGCGACTGCAACCCCGATTTCACTGTGTCTGATCCTGTCACAGAACTTCCCATCAAGCCAACCACCAAGCAAACAGTGGAGATCGCTATTTATGAGAAATGCATCATTGTTTGGGAGCTGCGGGTGGTGGGCTGGGAGGTTACCTATAATGCTGAATTCAAGCCTGATGCTAAAGATGCATATGCAATTATCATACAGAAAGCCACAAAGATGTCCCCCACTGATGAACCGGTGGTTTCCAATACCTTTAAAGTTGCTGAACTGGGAACATTATTGCTCACCATAGACAACCCTACCTTGAAAAAGAAGAGGCTTCTTTACAGGTTCAAGATCAAACCCTTATGTGATTGA 1215 0.4988 MAENDSNPPGPPGAAPAVEVEEEEKERESLKEESNRVSEWERKSVEELKEVLREELKSEGEVSIWGVPLLKDERSDVILLKFLRARELKVREALVMIQNTLKWRKDFNIDALLDEDLGDDLDKVVFMHGHGREGHSVCYNVYGEFQNKDLYQKAFSTQENRTKFLRWRIQLLERSIRNLDFSPGGINTVLQVNDLKNSPGPAKRELRLATKQALHLLQDNYPEFVAKQVFINVPWWYLAFYTMINPFLTQRTKSKFIFAGPLKSPDTLFKYISPEQVPVQYGGLSVDFCDCNPDFTVSDPVTELPIKPTTKQTVEIAIYEKCIIVWELRVVGWEVTYNAEFKPDAKDAYAIIIQKATKMSPTDEPVVSNTFKVAELGTLLLTIDNPTLKKKRLLYRFKIKPLCD 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00021 404 SUPERFAMILY CRAL/TRIO N-terminal domain 24 116 IPR036273 -
Cca04g00021 404 CDD SEC14 123 284 IPR001251 -
Cca04g00021 404 MobiDBLite consensus disorder prediction 18 36 - -
Cca04g00021 404 ProSiteProfiles GOLD domain profile. 294 399 IPR009038 -
Cca04g00021 404 Coils Coil 23 50 - -
Cca04g00021 404 SUPERFAMILY CRAL/TRIO domain 124 293 IPR036865 -
Cca04g00021 404 MobiDBLite consensus disorder prediction 1 36 - -
Cca04g00021 404 Pfam CRAL/TRIO domain 124 283 IPR001251 -
Cca04g00021 404 Gene3D - 30 316 IPR036865 -
Cca04g00021 404 PANTHER PATELLIN-3 58 404 - -
Cca04g00021 404 PANTHER PATELLIN-1 58 404 IPR044834 GO:0008289
Cca04g00021 404 SMART CRAL_TRIO_N_2 75 100 IPR011074 -
Cca04g00021 404 Pfam CRAL/TRIO, N-terminal domain 46 99 IPR011074 -
Cca04g00021 404 SMART sec14_4 119 286 IPR001251 -
Cca04g00021 404 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 114 283 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00021 Cca-Chr4 238997 241125 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00021 79 278 Acyl Lipid Metabolism Gene Families AT1G55840 27.751 3.12e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00021 - - gmx:100804006 657.521