Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00020 ATGGCCGAGGAACCCCAAAACCCACCTCCAGCCGAACAAGTGCTGCCCGTTGCTGATCCTCTTCCCCCACCTCAACCTCAACCTGAAGAGAAGGCTGCTGAAGCCGAACCTGCAATCATCGAAGAAGCAGAGAAGGCTCATGAAGACAAGATTTCCGTATCGGTTTCCTTCAAGGAGGAGACCAACGTGGTTGCCGACCTTCCTGAAGCACAGAAGAAGGCCCTTGATGAACTCAAGAAGCTTGTTCAAGAAGCGCTTAACAAACATGAGCTAGCTGCTCCCAAGGCCCCCGCCCCagaaccagagaagaaaaaaccacaagtggcagtggtacaagagaagaaggaaattgaagtaacagaagaagagaagaaggaagtacaagtaacgctgacggaagagaagaaggaagtacaagtgacagagacagaagagaagaaggaagtggaagtaacagaggagaagaaggaagtggaagttacagaagagaagaaggaagtggaagtaacagaagagaagaaggaagtggaaggaacagaggagaagaaggaaggagaagtaacagaagagaagaaagaggcggaagaagTGGAGATATGGGGAATTCCCCTGCTGGCGGACGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGAGAGCGAGGGATTTCAAGGTGAAGGATGCATTGACTATGATAAAGAACACGGTGAGGTGGCGGAAGGAATTCGGAATCGACGGTCTTGTGGCGGAGGATCTGGGAAGCGATTGGGACAAGGTGGTGTTCAATCATGGACAGGACAAGCAAGGGCATCCAGTGTGCTACAACGTGTTTGGTGAGTTCGAGAATAAGGAGTTGTACAACAAGACCTTCTCGGACGAGGAGAAGCGGAACAAGTTCATAAGGTGGAGGATTCAGTTGCTGGAGAAGAGCGTGAGAAGCCTTGACTTCTCTCCAACTGCAATCTCAACTATTGTGCAGGTCAACGACCTCAAAAACTCTCCTGGCCTCGGCAAGAGGGATCTCAGGCAGGCCACCAATCAGGCCCTTCAACTGCTTCAGGATAACTACCCTGAGTTTGTAGCCAAGCAGATATTCATCAATGTTCCCTGGTGGTACCTTGCCTTCTCTCGGATGATCAGTCCTTTCCTCACTCAGAGGACCAAGAGCAAATTTCTATTTGCTGGCCCATCCAAATCTGCTGAAACCCTTTTCAAGTAA 1218 0.3875 MAEEPQNPPPAEQVLPVADPLPPPQPQPEEKAAEAEPAIIEEAEKAHEDKISVSVSFKEETNVVADLPEAQKKALDELKKLVQEALNKHELAAPKAPAPEPEKKKPQVAVVQEKKEIEVTEEEKKEVQVTLTEEKKEVQVTETEEKKEVEVTEEKKEVEVTEEKKEVEVTEEKKEVEGTEEKKEGEVTEEKKEAEEVEIWGIPLLADERSDVILLKFLRARDFKVKDALTMIKNTVRWRKEFGIDGLVAEDLGSDWDKVVFNHGQDKQGHPVCYNVFGEFENKELYNKTFSDEEKRNKFIRWRIQLLEKSVRSLDFSPTAISTIVQVNDLKNSPGLGKRDLRQATNQALQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFLTQRTKSKFLFAGPSKSAETLFK 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00020 405 MobiDBLite consensus disorder prediction 130 189 - -
Cca04g00020 405 MobiDBLite consensus disorder prediction 1 30 - -
Cca04g00020 405 PANTHER PATELLIN-1 16 405 IPR044834 GO:0008289
Cca04g00020 405 CDD SEC14 255 405 IPR001251 -
Cca04g00020 405 Coils Coil 110 137 - -
Cca04g00020 405 Pfam CRAL/TRIO domain 258 404 IPR001251 -
Cca04g00020 405 SUPERFAMILY CRAL/TRIO domain 260 405 IPR036865 -
Cca04g00020 405 Coils Coil 144 182 - -
Cca04g00020 405 MobiDBLite consensus disorder prediction 1 50 - -
Cca04g00020 405 MobiDBLite consensus disorder prediction 95 109 - -
Cca04g00020 405 MobiDBLite consensus disorder prediction 34 50 - -
Cca04g00020 405 SUPERFAMILY CRAL/TRIO N-terminal domain 61 250 IPR036273 -
Cca04g00020 405 MobiDBLite consensus disorder prediction 89 109 - -
Cca04g00020 405 Gene3D - 138 405 IPR036865 -
Cca04g00020 405 SMART sec14_4 253 404 IPR001251 -
Cca04g00020 405 PANTHER PATELLIN-LIKE PROTEIN 16 405 - -
Cca04g00020 405 SMART CRAL_TRIO_N_2 210 235 IPR011074 -
Cca04g00020 405 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 263 405 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00020 Cca-Chr4 229315 231989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00020 214 390 Acyl Lipid Metabolism Gene Families AT5G47730 28.272 4.90e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00020 - K19996 gmx:100806382 389.423