Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00019 ATGGCGAAAGAGGAAGATGTGGTTGTTGTAGATGGTGCCGTTGACTACAGAGGTGGAGCAGCCATCAGATCGAAATCAGGGTCGTGGAGATCCGCTGGGTTTATCATAGGTGTGGAAGTGGCGGAGAGGATTGCGTATTACGGGATTCAGGGGAACCTCATATCCTATCTCACTGGACCACTTCGTCAGACTACGGCCACCGCCGCTGAGAATGTCAATGTATGGTCTGGAACTGCTTCCTTGCTTCCTCTATTTGGGGCTTTTCTCGCTGATTCTCTCCTTGGACGCTACCGCACTATAATACTCGCTTCCCTCATCTATATTCTGGGACTAGGCTTGTTAACACTATCAGCTATGCTTCCTTCTCTCACCAATTCTGAGTGCGAAGACAGCAATAAATTAAAATCATGCTCTTCTCAGTCGCAAGTAATCTTGTTCTTTGTGGCTCTTTATTTGGTCGCCATTGGACAGGGTGGACATAAGCCCTGTGTTCAGGCTTTTGGAGCAGATCAATTCGATGAACAACATCCAAAGGAACATAAAGATAGAAGCACATTCTTTAATTGGTGGTATTTTACTATGTGTGCAGGTTGCCTTGCAACTCTTTGGATCTTGAACTATATACAAGACAATCTTAGTTGGGTTCTTGGATTTGGAATTCCTTGTATTGTCATGATTATTGCATTGCTTGTTTTCTTGCTTGGAACAATGACCTATAGGTTTAACGTTAAGCAGAGTGACAAAAACCCCTTTCTAAGAATCGGCCGTGTATTTGTTGCTGCTATAAGAAATCGGCAAACCACCCTATCAAGCACAGTTGTCAAAGCAGAACATGGTGGAATGCTTCCTAATCAAAGTTCTGAACAATTCGAGTTCCTGAACAAAGCATTGTTAGCGGCAGAGGATTCCATAGAAGAGGAGAGTACTTGTAGCCTTAGTGAGGTGGAAGAAGCAAAAGCAGTACTGAGGCTGGTTCCTATTTGGGCTTCAACTCTGGTTTATGGTGTGGTGTTTGCTCAAGTTCCTACGTTCTTTACCAAGCAAGGGGTTACTTTGGAGAGAACAATATTTCCCGGTTTTGACATACCTGCTGCTTCTCTTCAAACACTTATGACTCTCGGCATTGTTTTCTTCAGTCCCATCTACGACCGTCTTTTTGTGCCAATGGCAAGAGCTATCACTGGCAAACCCTCAGGCATCACAATGCTGCAGAGAATTGGAACTGGAATTTTTATATCCATATTTACTATAGTTTTTGCGGCCTTTGTTGAGATGAAAAGATTAAAAACAGCTAGGGAGTCCGGTGTTGTTGATGAACCTAATGCCACTGTTCCAATGACCATATGGTGGCTGATTCCCCAATATTTCTTGTTCGGAGTCTCTGAAGTTTTTACCATGGTTGGTCTGCAGGAATTTTTCTATGACCAGGTCCCAAATGAACTAAGAAGCATGGGTCTTGCTCTCTACTTGAGCATCTTTGGTGTTGGGAGCTTTATAAGTGGCTTCCTCATTTCTGTGATAGAGAATGTGACTGGGAAAGATGGACAAGACAGTTGGTTTGCTAATAATCTGAATAAGGCCCACGTTGACTACTTTTACTGGCTACTTGCTGGACTCAGTGCGATGGGATTGGCCTTGTTCATCTGCTTTGCCAAATCTTACATTTATAATCACAAAGGAATCAGGCCACACTAG 1695 0.4348 MAKEEDVVVVDGAVDYRGGAAIRSKSGSWRSAGFIIGVEVAERIAYYGIQGNLISYLTGPLRQTTATAAENVNVWSGTASLLPLFGAFLADSLLGRYRTIILASLIYILGLGLLTLSAMLPSLTNSECEDSNKLKSCSSQSQVILFFVALYLVAIGQGGHKPCVQAFGADQFDEQHPKEHKDRSTFFNWWYFTMCAGCLATLWILNYIQDNLSWVLGFGIPCIVMIIALLVFLLGTMTYRFNVKQSDKNPFLRIGRVFVAAIRNRQTTLSSTVVKAEHGGMLPNQSSEQFEFLNKALLAAEDSIEEESTCSLSEVEEAKAVLRLVPIWASTLVYGVVFAQVPTFFTKQGVTLERTIFPGFDIPAASLQTLMTLGIVFFSPIYDRLFVPMARAITGKPSGITMLQRIGTGIFISIFTIVFAAFVEMKRLKTARESGVVDEPNATVPMTIWWLIPQYFLFGVSEVFTMVGLQEFFYDQVPNELRSMGLALYLSIFGVGSFISGFLISVIENVTGKDGQDSWFANNLNKAHVDYFYWLLAGLSAMGLALFICFAKSYIYNHKGIRPH 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00019 564 Pfam POT family 97 519 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cca04g00019 564 Gene3D MFS general substrate transporter like domains 1 562 IPR036259 -
Cca04g00019 564 SUPERFAMILY MFS general substrate transporter 47 552 IPR036259 -
Cca04g00019 564 PANTHER PEPTIDE/NITRATE TRANSPORTER PLANT-LIKE PROTEIN 15 560 - -
Cca04g00019 564 CDD MFS_NPF5 29 556 IPR044739 GO:0042937|GO:0042938|GO:0071916
Cca04g00019 564 ProSitePatterns PTR2 family proton/oligopeptide symporters signature 1. 86 110 IPR018456 GO:0006857|GO:0016020|GO:0022857
Cca04g00019 564 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 15 560 IPR000109 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00019 Cca-Chr4 220367 224737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00019 14 555 Organic Solute Cotransporters AT1G22540 65.867 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00019 K14638 - gmx:100776720 927.932