Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca04g00017 | ATGAACAAGCTGGTGGTGGAAGTAGTGGATGCGAGCGACCTTATGCCCAAAGATGGGGAAGGGTCAGCAAGTCCCTTTGTAGAGGTAGAGTTTGATGAGCAGCAGCACAGGACTGAAACCAAGCACAAAGACCTCAATCCTTGTTGGAATGAGAAGTTGGTGTTCAACATCAATAACCCCAGAGATCTTCCCCACAAGACAATTGAAGTGCTTGTATACAATCACAATGATCGAAAAGGTGGCAACCACAAGAACTTCCTAGGAAGGGTGAGACTTTCAGGCGCTTCTATCCCTCTGTCGGAGTCCCAGGCCAGTGTGGAACGGTTCCCACTTGAGAAACGTGGTCTCTTTTCAAACATCAGAGGAGAAATCGGTCTTAGATGTTATGCAGTGCATGATGACACAGCTCCTCCTCCCCCGCAACCCGAAGACTATAGTCCTACTGCCACTGCGGAACACCCTCACGAGGACACTCCCTTGCAAGAAATAAACACCAACATGGTAGATGAGGAAAGTGTGGTTGGTGACGGGGagaagaagaagaagaagatgaaaaagaaagagaaggaagTTAGGACTTTTCACTCAATTCCAGCAGCAGCTCCTGCAGCCAAGGCCTTCCCGGCAGTGGAAACGCAAAGGAGGGTTGATTTTGCGAAAGCTGGGCCACCCAATGTGATGTTAATGCAGATCCCAAAGCAAAACCCGGAGTATGCATTGGTGGAGACAAGTCCACCACTTGCAGCTCGTTTGCGCTATAGAGTAGGGGACAAGATATCAACCACCTACGATTTAGTGGAGCAGATGCATTACTTGTATGTCAATGTGGTGAAGGCTAGGGATCTCCCTGTCATGGATATCTCGGGAAGCCTTGACCCTTATGTGGAGGTCAAGCTTGGTAACTACAAGGGCCTCACTAAGCACTTGGAGAAGAATCAGAACCCTGTTTGGAAGCAAATCTTTGCCTTCTCCAAGGAGAGGTTGCAATCAAATTTGCTTGAAGTGACCGTGAAGGATAAGGACATTGGGAAGGATGATTTTGTGGGGAGAGTTACTTTTGATCTCACTGAGGTTCCTCTTCGGGTACCCCCAGATAGCCCCTTAGCTCCTCAATGGTACAGATTGGAGGATAAGAAGGGGCAAAAAATAATGAATAATGGGGAAATCATGCTTGCAGTTTGGATGGGAACACAGGCGGATGAGTCCTTTCCGGAGGCCTGGCACTCCGATGCTCATAACATTAGTCACTCCAACCTTGCAAACACGCGCTCAAAGGTATATTTCTCCCCCAAGCTTTACTATCTTAGAGTTCAAGTAATTGAAGCTCAAGATCTTGTTCCTTCCGAGAAAGGAAGAGCCCCAGACACTGTTGTTAGAGTACAACTGGGGAGTCAGATGAGATTCACCAGGCCTTCTCAAATTAGAAGCACCAACCCAGTTTGGAACGACGAGCTTATGTTTGTGGCAGCGGAGCCACTTGAGGATTTTATCATTGTCACAGTTGAGGAAAAACTAGGTGGTCCTAATCTTGAAATCTTAGGAAGGGAGATCATATATGTGAGAAGTGTTCCACCCAGGCACGAGACCAGCAAGCTCCCTGATTCTCGTTGGTTCAATTTGCGCAGGCCTAGTGCAGTTGGAGAGGAGGAAACAGAGAAAAAGAAGGAGAAATTTTCAAGCAAGATTCACCTCCGAGTGTGTCGTGAGGACGGGTACCATGTGCTTGATGAGTCCACGCATTTCAGCAGTGATCTTCAGCCATCCTCCAAACATTTGAGGAAGAAAAACATTGGAATTCTCGAACTTGGGATACTGAGTGCCCGGAATTTGCTACCCATGAAGGGCAAGGAAGGTAGGACCACCGATGCATACTGCGTGGTCAAGTATGGCAACAAGTGGGTTCGAACCAGAACTCTGCTAGATACTCTATCCCCTCGATGGAATGAGCAGTATACCTGGGAAGTTTATGATCCGTGTACTGTCATCACAATTGGGGTTTTTGACAACCACCACGTCAATGGGAGCAGTGATGCTAGAGATCAGAGAATTGGAAAGGTAAGAATCCGGTTATCAACTCTGGAAACTGATAGGGTGTATACTCATTTTTATCCTCTGCTGGTTCTCCAACACAACGGCCTGAAGAAGAATGGAGAGCTTCATTTGGCAGTGAGATTCACTTGCACCGCTTGGGTTAATATGGTAGCCCAGTATGGCAGGCCTTTGCTTCCCAAAATGCATTATGTCCAACCAATACCTGTTAGGCACATAGATTGGCTCCGCCACCAGGCCATGCAGATTGTGGCTGCTCGCCTATCTAGAGCTGAGCCACCCCTGAGGCGTGAAGCAGTTGAGTATATGCTTGATGTGGATTACCATATGTGGAGTCTAAGGAGAAGCAAAGCCAATTTTCACCGCATAATGTCACTACTCTCGGGAGTTACAGCTGTTTGTAAATGGTTTGCTGACATCTGTACTTGGAGAAATCCAATCACAACCTGCCTTGTTCATGTCTTGTTCTTGATATTGGTGTGCTACCCGGAATTGATATTGCCAACCATTTTTCTTTACTTGTTTGTGATTGGGATTTGGAATTACCGGTTCAGGCCAAGGCAGCCACCTCACATGGATGCAAGGCTTTCACAAGCAGAAAGTGTCCACCCAGATGAACTGGACGAGGAATTTGACTCTTTTCCAACTACAAGGCCTTCAGATATTGTGAGAATGAGGTATGACAGATTGCGGAGTGTGGCAGGTAGAGTACAGGCTGTGGTTGGAGATTTGGCTACCCAGGGAGAAAGAGCTCAAGCCATACTAAGTTGGAGAGACTCCAGGGCTACGTCTATCTTCATCATCTTCTCACTCATTTGGGCTGTTTTCATTTACATTACTCCCTTCCAAGTAGTAGCTATTCTAGTAGGCCTCTACATGTTGCGTCATCCTCGGTTTAGGAGCAAGATGCCATCGGTACCAGTTAATTTCTTCAAGAGATTGCCTTCCAAATCAGATATGCTCATATGA | 3018 | 0.4642 | MNKLVVEVVDASDLMPKDGEGSASPFVEVEFDEQQHRTETKHKDLNPCWNEKLVFNINNPRDLPHKTIEVLVYNHNDRKGGNHKNFLGRVRLSGASIPLSESQASVERFPLEKRGLFSNIRGEIGLRCYAVHDDTAPPPPQPEDYSPTATAEHPHEDTPLQEINTNMVDEESVVGDGEKKKKKMKKKEKEVRTFHSIPAAAPAAKAFPAVETQRRVDFAKAGPPNVMLMQIPKQNPEYALVETSPPLAARLRYRVGDKISTTYDLVEQMHYLYVNVVKARDLPVMDISGSLDPYVEVKLGNYKGLTKHLEKNQNPVWKQIFAFSKERLQSNLLEVTVKDKDIGKDDFVGRVTFDLTEVPLRVPPDSPLAPQWYRLEDKKGQKIMNNGEIMLAVWMGTQADESFPEAWHSDAHNISHSNLANTRSKVYFSPKLYYLRVQVIEAQDLVPSEKGRAPDTVVRVQLGSQMRFTRPSQIRSTNPVWNDELMFVAAEPLEDFIIVTVEEKLGGPNLEILGREIIYVRSVPPRHETSKLPDSRWFNLRRPSAVGEEETEKKKEKFSSKIHLRVCREDGYHVLDESTHFSSDLQPSSKHLRKKNIGILELGILSARNLLPMKGKEGRTTDAYCVVKYGNKWVRTRTLLDTLSPRWNEQYTWEVYDPCTVITIGVFDNHHVNGSSDARDQRIGKVRIRLSTLETDRVYTHFYPLLVLQHNGLKKNGELHLAVRFTCTAWVNMVAQYGRPLLPKMHYVQPIPVRHIDWLRHQAMQIVAARLSRAEPPLRREAVEYMLDVDYHMWSLRRSKANFHRIMSLLSGVTAVCKWFADICTWRNPITTCLVHVLFLILVCYPELILPTIFLYLFVIGIWNYRFRPRQPPHMDARLSQAESVHPDELDEEFDSFPTTRPSDIVRMRYDRLRSVAGRVQAVVGDLATQGERAQAILSWRDSRATSIFIIFSLIWAVFIYITPFQVVAILVGLYMLRHPRFRSKMPSVPVNFFKRLPSKSDMLI | 1005 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca04g00017 | 1005 | CDD | C2D_MCTP_PRT_plant | 599 | 722 | - | - | |
| Cca04g00017 | 1005 | MobiDBLite | consensus disorder prediction | 133 | 157 | - | - | |
| Cca04g00017 | 1005 | Gene3D | C2 domain | 1 | 133 | IPR035892 | - | |
| Cca04g00017 | 1005 | ProSiteProfiles | C2 domain profile. | 581 | 703 | IPR000008 | - | |
| Cca04g00017 | 1005 | Pfam | Plant phosphoribosyltransferase C-terminal | 850 | 1004 | IPR013583 | - | |
| Cca04g00017 | 1005 | ProSiteProfiles | C2 domain profile. | 1 | 113 | IPR000008 | - | |
| Cca04g00017 | 1005 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 3 | 141 | IPR035892 | - | |
| Cca04g00017 | 1005 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 271 | 411 | IPR035892 | - | |
| Cca04g00017 | 1005 | CDD | C2C_MCTP_PRT_plant | 434 | 587 | - | - | |
| Cca04g00017 | 1005 | ProSiteProfiles | C2 domain profile. | 413 | 538 | IPR000008 | - | |
| Cca04g00017 | 1005 | CDD | C2A_MCTP_PRT_plant | 3 | 129 | - | - | |
| Cca04g00017 | 1005 | PANTHER | PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 | 1 | 1005 | - | - | |
| Cca04g00017 | 1005 | Pfam | C2 domain | 598 | 705 | IPR000008 | - | |
| Cca04g00017 | 1005 | Pfam | C2 domain | 271 | 373 | IPR000008 | - | |
| Cca04g00017 | 1005 | Pfam | C2 domain | 434 | 540 | IPR000008 | - | |
| Cca04g00017 | 1005 | Pfam | C2 domain | 3 | 103 | IPR000008 | - | |
| Cca04g00017 | 1005 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 598 | 731 | IPR035892 | - | |
| Cca04g00017 | 1005 | PANTHER | BNAA09G30540D PROTEIN | 1 | 1005 | - | - | |
| Cca04g00017 | 1005 | CDD | C2B_MCTP_PRT_plant | 271 | 397 | - | - | |
| Cca04g00017 | 1005 | SMART | C2_3c | 599 | 702 | IPR000008 | - | |
| Cca04g00017 | 1005 | SMART | C2_3c | 3 | 111 | IPR000008 | - | |
| Cca04g00017 | 1005 | SMART | C2_3c | 271 | 367 | IPR000008 | - | |
| Cca04g00017 | 1005 | SMART | C2_3c | 434 | 532 | IPR000008 | - | |
| Cca04g00017 | 1005 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 433 | 589 | IPR035892 | - | |
| Cca04g00017 | 1005 | Gene3D | C2 domain | 581 | 727 | IPR035892 | - | |
| Cca04g00017 | 1005 | Gene3D | C2 domain | 257 | 395 | IPR035892 | - | |
| Cca04g00017 | 1005 | Gene3D | C2 domain | 416 | 567 | IPR035892 | - | |
| Cca04g00017 | 1005 | ProSiteProfiles | C2 domain profile. | 253 | 373 | IPR000008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca04g00017 | Cca-Chr4 | 205744 | 208761 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca04g00017 | 1 | 1005 | Lipid Metabolism Gene Families | AT1G22610 | 72.754 | 0.0 | 1507 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca04g00017 | - | - | gmx:100778133 | 1794.63 |