Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00014 ATGCTAGTGGCGACCGGCAATACCCctctctctctctctctctctctctctctctGCCAAACAAAATCATTGACCTCAAGTCCTCAACCCCCGTCACGCAGCGCCTATACCCTCTCCGCCTCCGTCTTCTCCTTCCTCGATCCTCATCCATTCCATCTTAACCCAATGTCACACTTTGTAAATTTTCGGCTTTTCTCACTTTTCCACACAGTCAAAACCCTTCCTTTCTCCACCCACCAAACGGGCACGGTTGATACCCTCTGCACCCATCTCCACCAAAGCAATGGCAGTTTTGAGAATTCATTGTCTAAGGTTAAGCCAAAACTCAACTCTCAATGTGTCATCCAAGTCCTCAACTCATGCCATCCCAAACAACCTCAATTGGGTGTCAGGTTTTTCGTTTGGGCTGGATTTCAATCGGGCTACAGGCACAGTGCTTACATGTACACGAAAGCTTGCAACTTGCTTGGGATTCGTCACAATCCCCACATTATTCGTGATGTCGTTCGCTCTTATGAGGCTGAAGGATGTTTAGTCACTGTCAACATGTTTAGGGAGGTGCTGAAGCTGTGTAAAGAAGCTCAGCTTGCTGATGTGGCTTTGTGGGTGTTGAGGAAGATGCAATACAGTTTCAACCTCCATGCTGACACTGTGATGTATAATGTGGTTATAAGGTTATGTTGCAAGAAGGGTGACATTCAAATGGCCGAGAAGTTAACGAGAGAGATGAGTTTTAATGGTCTTTGTCCTGATCTTATTACCTATATGGCAATAGTTGAGGGATTATGCCATGCAGGTCGATCTGAGGATGCTTACTCTGTGCTTAAGGTTATGAGAGTACATGGATGTTCGCCCAATTTGGTGATCTTATCGGCCATTTTAGACGGCATGTGTAGGTCTGGATCCATGGATAGGGCATTGGAGTTGCTGGATGAAATGGAGAAAGGTGGGGATTGTACTCCAAATGTTGTTACTTATACATCTGTGATTCAAAGTTTCTGTAAGAGAGGCCAGTGGACGGAAGCACTTGATATTCTAGATAGAATGAGAGCTTTAGGGTGCAATGCAAATCATGTCACTGTTTTTACTTTTGTTGAAAGCCTTTGTGCTGAGGGTCGTGTGGAAGAAGCTTATGAGTTGATGGATAAATTTGCGGTGGAACATGGTGTTTCGTATGGTGATTGCTACAGTTCACTTGTGATTTCTTTGATAAGGATTAAAAAGCTGGAGGAAGCAGAGAAGCTCTTCAAGGAAATGCTTGCTGGTGATGTCAAACTGGATACTTTGGCATCTAGCCTTTTGCTAAAGGAGCTCTCTGTGAAGGACAGGGTATTGGATGGATTCTACTTGCTTGAAGCAATTGAGAATAAGGGATGCTTGTCTTCCATTGACTCTGATATTTATTCTATTCTTTTAATTGGACTTTGTCAAAGAAGCCACCTGACGGAGGCCACAAAGCTGACCAAGATAATGCTCAAGAGAAATGCGGAACATATAGGAAAAACAGGGACATTTAAATGA 1521 0.4293 MLVATGNTPLSLSLSLSLCQTKSLTSSPQPPSRSAYTLSASVFSFLDPHPFHLNPMSHFVNFRLFSLFHTVKTLPFSTHQTGTVDTLCTHLHQSNGSFENSLSKVKPKLNSQCVIQVLNSCHPKQPQLGVRFFVWAGFQSGYRHSAYMYTKACNLLGIRHNPHIIRDVVRSYEAEGCLVTVNMFREVLKLCKEAQLADVALWVLRKMQYSFNLHADTVMYNVVIRLCCKKGDIQMAEKLTREMSFNGLCPDLITYMAIVEGLCHAGRSEDAYSVLKVMRVHGCSPNLVILSAILDGMCRSGSMDRALELLDEMEKGGDCTPNVVTYTSVIQSFCKRGQWTEALDILDRMRALGCNANHVTVFTFVESLCAEGRVEEAYELMDKFAVEHGVSYGDCYSSLVISLIRIKKLEEAEKLFKEMLAGDVKLDTLASSLLLKELSVKDRVLDGFYLLEAIENKGCLSSIDSDIYSILLIGLCQRSHLTEATKLTKIMLKRNAEHIGKTGTFK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00014 506 Pfam PPR repeat family 285 335 IPR002885 -
Cca04g00014 506 Pfam PPR repeat family 216 264 IPR002885 -
Cca04g00014 506 Gene3D Tetratricopeptide repeat domain 246 315 IPR011990 GO:0005515
Cca04g00014 506 Gene3D Tetratricopeptide repeat domain 316 387 IPR011990 GO:0005515
Cca04g00014 506 Gene3D Tetratricopeptide repeat domain 85 245 IPR011990 GO:0005515
Cca04g00014 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Cca04g00014 506 Pfam PPR repeat 467 495 IPR002885 -
Cca04g00014 506 Pfam PPR repeat 395 420 IPR002885 -
Cca04g00014 506 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 73 495 - -
Cca04g00014 506 Gene3D Tetratricopeptide repeat domain 390 498 IPR011990 GO:0005515
Cca04g00014 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 251 285 IPR002885 -
Cca04g00014 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 250 IPR002885 -
Cca04g00014 506 Pfam PPR repeat 353 383 IPR002885 -
Cca04g00014 506 TIGRFAM PPR: pentatricopeptide repeat domain 324 357 IPR002885 -
Cca04g00014 506 TIGRFAM PPR: pentatricopeptide repeat domain 253 286 IPR002885 -
Cca04g00014 506 TIGRFAM PPR: pentatricopeptide repeat domain 395 427 IPR002885 -
Cca04g00014 506 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Cca04g00014 506 TIGRFAM PPR: pentatricopeptide repeat domain 218 251 IPR002885 -
Cca04g00014 506 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 73 495 - -
Cca04g00014 506 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 356 IPR002885 -
Cca04g00014 506 SUPERFAMILY TPR-like 323 421 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00014 Cca-Chr4 171200 173234 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca04g00014 189 502 Glycosyltransferase AT1G05670 29.299 1.29e-38 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00014 - - ccaj:109798432 973.385