Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00011 ATGAGTGAGAGTAACGGGAACAGCAAGAGGAGAAATGTGGAAGATCAAGATCTGGGACTGTACTTCTTGGAGGCGTGTAGGGATAGggaaatgaaagagggagtgatggaggaagaggaagaggCACCGAGGGAGCTGAACACGATTAACAGCTCTGGTGGTTTCGTGGTGGTGTCAACTGACAAGCTGTCAGTCAAGTATACGAGCGTGAACCTTCACGGCCATGACGTGGGTGTGATTCAGGCCAACAAGCCTGCTCCTACGAAGCGCCTCATTTACTATTTCGAGATTCACGTCAAGGATGCGGGCGTTAAGGGCCAGATTGCCATTGGCTTCACCTCTGAGACCTTCAAGATGCGAAGACAGCCAGGGTGGGAGGCCAATAGCTGCGGCTACCACGGCGATGATGGTCTGCTTTATCGTGGACATGGCAAGGGGGAGGCCTTTGGCCCAACCTTTACATCTGGTGATGTAGTTGGTGCCGGAATTAACTATGCCGCCCATGAATTCTTTTTCACGAAAAATGGCCAAGTCGTTGGCTCTGTTTACAAAGACATGAAGGGCCCCCTTTTTCCAACCATTGCTGTTCATAGCCAAAATGAAGAGGTACATGTCAACTTTGGGCAGAAACCATTCACTTTTGACCTAAAGGAATTTGAAGCACAAGAAAGAATGAAGCAGCAACTGAAAATAGAGGAAATTTCTGTGCCACCAAATGTCAGTTATGGAATTGTTCGCTCCTACCTGCTACACTATGGCTACGAAGATACATTAAATTCATTTGATGTGGCTAGTAAAAGTACTGTTCCTCCTATATACATAGCCCAAGAAAGTGGAAGTGATGATCAGGAAATAACATATGCTTTAAACCACAGAAAGACTCTACGGCAGCTAATTAGGAACGGGGACATTGATGTTGCATTTGGTAAATTGCGTGAATGGTATCCACAGATTGTTGAGGACAATACGTCAGCTACATGTTTTCTGCTTCATTGCCAAAAATTTATCGAATTAGTTCGGGTTGGAGCACTTGAGGAGGCTGTCAAATATGGAAGAATAGAATTGACATGTTTTTTTGGGTTGCCTGTCTTTGAGGATTTAGTTCAGGACTGTGTTGCTTTGCTGGCATATGAACAGCCTCTGGAATCCTCCGTAGGTTATCTTCTGAAAGACTCGCAGCGTGAAGTTGTAGCTGACACAGTAAATGCCATGATATTGTCCACAAATCCGAATACGAAAGAATCTAAACATTGCTTGCACTCCTATCTTGAGAGGTTACTTAGACAGCTCACTGCTTGCTGCTTAGAGAGACGATCGTTGAATGGAGAGCAGGGAGAAGCTTTCCAACTTCATAGAGTGCTTAGCAGTAGTAAAAGAGGCTAG 1383 0.4389 MSESNGNSKRRNVEDQDLGLYFLEACRDREMKEGVMEEEEEAPRELNTINSSGGFVVVSTDKLSVKYTSVNLHGHDVGVIQANKPAPTKRLIYYFEIHVKDAGVKGQIAIGFTSETFKMRRQPGWEANSCGYHGDDGLLYRGHGKGEAFGPTFTSGDVVGAGINYAAHEFFFTKNGQVVGSVYKDMKGPLFPTIAVHSQNEEVHVNFGQKPFTFDLKEFEAQERMKQQLKIEEISVPPNVSYGIVRSYLLHYGYEDTLNSFDVASKSTVPPIYIAQESGSDDQEITYALNHRKTLRQLIRNGDIDVAFGKLREWYPQIVEDNTSATCFLLHCQKFIELVRVGALEEAVKYGRIELTCFFGLPVFEDLVQDCVALLAYEQPLESSVGYLLKDSQREVVADTVNAMILSTNPNTKESKHCLHSYLERLLRQLTACCLERRSLNGEQGEAFQLHRVLSSSKRG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00011 460 SMART SPRY_3 90 211 IPR003877 GO:0005515
Cca04g00011 460 PANTHER RAN BINDING PROTEIN 9-RELATED 28 457 - -
Cca04g00011 460 SUPERFAMILY Concanavalin A-like lectins/glucanases 50 214 IPR013320 -
Cca04g00011 460 SMART ctlh 288 346 IPR006595 -
Cca04g00011 460 Pfam CTLH/CRA C-terminal to LisH motif domain 290 432 IPR024964 -
Cca04g00011 460 SMART toby_final6 342 443 IPR013144 -
Cca04g00011 460 PANTHER RAN-BINDING PROTEIN M HOMOLOG 28 457 - -
Cca04g00011 460 CDD SPRY_RanBP_like 78 208 IPR044736 -
Cca04g00011 460 ProSiteProfiles B30.2/SPRY domain profile. 24 212 IPR001870 -
Cca04g00011 460 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 288 346 IPR006595 -
Cca04g00011 460 Pfam SPRY domain 92 209 IPR003877 GO:0005515
Cca04g00011 460 Gene3D - 25 228 IPR043136 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00011 K23334 - gmx:100805319 864.759