Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03184 ATGGGTAATGTGAAGAAGCAAGGGTTGGTGGGAGTGCCGAAAGGGTGTTTGGCAATAAAGGTGGGAGAAGGAGAAGAGCAAGAAAGGTTTGTGGTGCCGGTCATGTACTTCAACCACCCACTCTTCATGCAGCTTCTCAAGGAGGCAGAGGAAGAGTACGGCTTCGATCAAAAAGGAACCATAACCATCCCTTGTCATGTCCGCCACTTTAGGAACCGCCGCCTCGTCCTGGGATGCCCGCTCTACCACTGCCTCGCCCCGGCATGCCACCACCACCTGGAGGTGGTGTTCCGGTGTATGGTCCTcctcgacctggcatgcctcgtccaagcccagcccggccttgccggcctcgtcctcggcatcggTGGCCCCGCTCCCGGCATGATGCAGACTCAGATCTCGCGCCCGCCGCAGCTCAACGCGCCGTCGGTGTCTTACCCCTACGCTCCGCTGCCGGTGATGCGCCCGCCTGGCCAGATGCTGGGGTACCCCGGCCAAGGCCCGCCTCCTATGGCGAGGGGACCTCCGCCGCCGATGCCGCCCGGGCAATTCGCTTCCAGGCCCGGCGGTGCTCTGCCGCAGCCTTACCCTGTTCCGCCACAGTTTGGACAGCGTCCCATGGGGCCTCCTCCTCCTGGTAAGGGGTCCTccggcgccgcctcgtcccgggatgcccgctccgccaccgcctcgccccgACATGCCACCACCACCTGGAGGTGGTGTTCCAGTGTATGGTCCTCCTCGACCTGGCATGCCCCCTCCGCCAAACCCTTCGAATCAACAACAACAGTAATGGGAGAAGGGATTGATAGGTTGGTTTGTGCTGTTTTGCTCATTTCTCTCTTTTAG 855 0.5216 MGNVKKQGLVGVPKGCLAIKVGEGEEQERFVVPVMYFNHPLFMQLLKEAEEEYGFDQKGTITIPCHVRHFRNRRLVLGCPLYHCLAPACHHHLEVVFRCMVLLDLACLVQAQPGLAGLVLGIGGPAPGMMQTQISRPPQLNAPSVSYPYAPLPVMRPPGQMLGYPGQGPPPMARGPPPPMPPGQFASRPGGALPQPYPVPPQFGQRPMGPPPPGKGSSGAASSRDARSATASPRHATTTWRWCSSVWSSSTWHAPSAKPFESTTTVMGEGIDRLVCAVLLISLF 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03184 284 PANTHER SMALL AUXIN-UP RNA-RELATED 7 78 - -
Cca03g03184 284 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 7 78 IPR003676 GO:0009733
Cca03g03184 284 MobiDBLite consensus disorder prediction 193 214 - -
Cca03g03184 284 MobiDBLite consensus disorder prediction 163 185 - -
Cca03g03184 284 Pfam Auxin responsive protein 12 71 IPR003676 GO:0009733
Cca03g03184 284 MobiDBLite consensus disorder prediction 221 235 - -
Cca03g03184 284 MobiDBLite consensus disorder prediction 158 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03184 Cca-Chr3 53263700 53273971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03184 11 71 Calmodulin-binding Proteins AT5G20810 54.098 1.84e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03184 - K14488 gmx:100780500 131.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03184 03 53263700 53273971 Cca03g03184 03 53263700 53273971 ECH
Cca11g00539 11 8104542 8106833 Cca03g03184 03 53263700 53273971 ECH
Cca03g03184 03 53263700 53273971 Cca11g00539 11 8104542 8106833 PCT