Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03131 ATGGCTTCCGAGACGAAGATCGTCAATCTTGCCGAGGAAGCCAAGCTCGCCAGAGAAGGTGTCAAGGCTCCCACCTATGCCTTTTCCACCATCTGCAAGTCCCTCGTCGCCGGTGGAGTCGCCGGAGGACTATCACGAACGGCAGTTGCTCCACTGGAACGGATGAAAATTTTACTACAGGTTCAGAATCCACACAACATAAAATACAATGGAACTATTCAAGGTCTAAAATATATATGGAGATCCGAAGGTTTCCGTGGACTGTTCAAAGGGAATGGTACTAATTGTGCTCGAATTGTCCCTAATTCTGCAGTCAAGTTCTTCAGTTATGAGCAAGCTTCCAAAGGTATACTACATCTGTATCAGAAGCAAACTGGAAACGAGGATGCTCAACTGACTCCTCTTTTACGACTTGGTGCTGGAGCATGTGCGGGAATAATTGCCATGTCTGCAACTTATCCAATGGACATGGTTCGAGGCAGGATAACTGTACAGACGGAGAAGTCCCCTTACCAATACAGAGGAATGTTTCATGCTCTGTCAACTGTACTCAGGGAAGAAGGTCCACGTGCTTTATATAAGGGTTGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCTGTGTACGAGTCTTTGAAAGATTGGTTAATTAAATCCAATCCATTGGGTCTAGTACAAGATTCTGAGTTGAGTGTGACAACTCGCCTAGCTTGTGGTGCCGCAGCTGGAACTATTGGGCAAACTGTTGCTTACCCTCTCGATGTCATTCGTCGAAGAATGCAGATGGTGGGTTGGAATCATGCTGCTTCTGTTGTAGCTGGTGATGGGAGAGGGAAGGTACCACTTGAATACACTGGCATGATTGATGCTTTTAGGAAAACTGTCAGATACGAAGGTTTTGGCGCATTATACAAGGGTCTGGTGCCAAATTCTGTAAAGGTCGGTCTTCATCTAATACGCGTGAATTATGTTCTGTTCTGA 996 0.4558 MASETKIVNLAEEAKLAREGVKAPTYAFSTICKSLVAGGVAGGLSRTAVAPLERMKILLQVQNPHNIKYNGTIQGLKYIWRSEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHLYQKQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNPLGLVQDSELSVTTRLACGAAAGTIGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRGKVPLEYTGMIDAFRKTVRYEGFGALYKGLVPNSVKVGLHLIRVNYVLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03131 331 PRINTS Mitochondrial carrier protein signature 91 111 IPR002067 GO:0055085
Cca03g03131 331 PRINTS Mitochondrial carrier protein signature 193 211 IPR002067 GO:0055085
Cca03g03131 331 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Cca03g03131 331 PRINTS Mitochondrial carrier protein signature 147 165 IPR002067 GO:0055085
Cca03g03131 331 PRINTS Mitochondrial carrier protein signature 244 266 IPR002067 GO:0055085
Cca03g03131 331 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Cca03g03131 331 SUPERFAMILY Mitochondrial carrier 31 324 IPR023395 -
Cca03g03131 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 235 331 IPR018108 -
Cca03g03131 331 Pfam Mitochondrial carrier protein 31 116 IPR018108 -
Cca03g03131 331 Pfam Mitochondrial carrier protein 132 224 IPR018108 -
Cca03g03131 331 Pfam Mitochondrial carrier protein 234 319 IPR018108 -
Cca03g03131 331 PANTHER SOLUTE CARRIER FAMILY 25 4 320 - -
Cca03g03131 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 132 220 IPR018108 -
Cca03g03131 331 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 116 IPR018108 -
Cca03g03131 331 PANTHER BNAA09G39370D PROTEIN 4 320 - -
Cca03g03131 331 Gene3D Mitochondrial carrier domain 27 329 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03131 Cca-Chr3 52742566 52747696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03131 35 319 EF-hand Containing Proteins AT5G51050 39.161 7.90e-61 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03131 K14684 - gmx:100777048 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03131 03 52742566 52747696 Cca03g03131 03 52742566 52747696 ECH
Cca03g03131 03 52742566 52747696 Cca11g00613 11 10020361 10027198 PCT