Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02887 ATGTGGAGCTCCACAACCACCACCATGCTCGCCGTAATAGCTCTCACGACGTTTCTCTCACCGGCTTCAGCCGACGACGTCGTTGCGCTCACAGAGGACACCTTCGAAACCCAGGTTGGCAAGGATCGCTTCGCTCTCGTCGAGTTTTACGCTCCCTGGTGCGGACACTGTAAAAGGCTTGCCCCTGAGTACGAACAACTCGGAGCCAGTTTTAAGAAAGCCAAGTCCGTTTTGATTGCCAAGGTGGATTGTGATGAACATAAAAGCGTTTGCAGTAAATATGGGGTTTCTGGTTACCCTACGATTAAATGGTTTCCTAAGGGATCTCTTGAACCAAAGAAGTATGAAGGAGCACGTACTGCAGAAGCCCTTGCTGCGTTTGTGAACTTGGAAGCAGGCACCAATGTGAAGATAGCTTCTGTTCCATCTAGTGTGGTAGTTCTCTCTCCGGATAACTTTAATGAGGTTGTCTTGGATGAAACTAAAGATGTTCTGGTGGAATTCTATGCACCATGGTGTGGTCATTGCAAGGCCCTTGCCCCTACTTATGAAAAGGTTGCTGCAGTATTTAAACTGGACGAAGAAGTAGTTCTAGCCAATGTTGATGCTGACAAGTATAAGGATTTGGCTGAGAAATATGGTGTTAGTGGCTATCCTACACTAAAGTTTTTCCCAAAGAACAATAAAGCTGGTGAAGATTATGGCGGTGGCCGTGATTTGGATGATTTTGTAGCTTTCATCAATGAGAGATGTGGCACCTACCGTGATGGGAAGGGTCAACTTACTTCTAAAGCTGGTATAATATCGTCTCTGGATGGCTTGGTGAAGGAGTTTGTGAGTGCTGATGAGAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAAGAAGTTAAGAAGCTTAAAGGTCATGCTGCAAGATATGGCAACCTCTACTTAAAACTTGCTAAGAAGGGTATGGAAAAGGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGACCGTATGCTTGAGAAGTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTGCTTGA 1083 0.4506 MWSSTTTTMLAVIALTTFLSPASADDVVALTEDTFETQVGKDRFALVEFYAPWCGHCKRLAPEYEQLGASFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIKWFPKGSLEPKKYEGARTAEALAAFVNLEAGTNVKIASVPSSVVVLSPDNFNEVVLDETKDVLVEFYAPWCGHCKALAPTYEKVAAVFKLDEEVVLANVDADKYKDLAEKYGVSGYPTLKFFPKNNKAGEDYGGGRDLDDFVAFINERCGTYRDGKGQLTSKAGIISSLDGLVKEFVSADENEKKAVYSRLEEEVKKLKGHAARYGNLYLKLAKKGMEKGADYAKNEIQRLDRMLEKSISPAKADEFTLKKNILSTFA 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02887 360 Gene3D Glutaredoxin 136 250 - -
Cca03g02887 360 SUPERFAMILY Thioredoxin-like 25 129 IPR036249 -
Cca03g02887 360 CDD PDI_a_ERp38 151 247 - -
Cca03g02887 360 SUPERFAMILY Thioredoxin-like 142 254 IPR036249 -
Cca03g02887 360 SUPERFAMILY ERP29 C domain-like 265 359 IPR036356 -
Cca03g02887 360 TIGRFAM pdi_dom: protein disulfide-isomerase domain 30 129 IPR005788 GO:0003756
Cca03g02887 360 TIGRFAM pdi_dom: protein disulfide-isomerase domain 149 250 IPR005788 GO:0003756
Cca03g02887 360 ProSitePatterns Thioredoxin family active site. 165 183 IPR017937 -
Cca03g02887 360 Pfam Thioredoxin 27 129 IPR013766 -
Cca03g02887 360 Pfam Thioredoxin 145 248 IPR013766 -
Cca03g02887 360 Gene3D Glutaredoxin 18 135 - -
Cca03g02887 360 ProSiteProfiles Thioredoxin domain profile. 9 133 IPR013766 -
Cca03g02887 360 ProSiteProfiles Thioredoxin domain profile. 137 252 IPR013766 -
Cca03g02887 360 CDD PDI_a_ERp38 26 128 - -
Cca03g02887 360 Gene3D - 264 360 IPR036356 -
Cca03g02887 360 CDD ERp29c 268 359 IPR011679 GO:0005783
Cca03g02887 360 PRINTS Thioredoxin family signature 164 172 - -
Cca03g02887 360 PRINTS Thioredoxin family signature 172 181 - -
Cca03g02887 360 PRINTS Thioredoxin family signature 214 225 - -
Cca03g02887 360 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 266 359 IPR011679 GO:0005783
Cca03g02887 360 PANTHER PROTEIN DISULFIDE ISOMERASE-LIKE 2-1 7 359 - -
Cca03g02887 360 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 7 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02887 Cca-Chr3 50177232 50181676 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02887 K09584 - gmx:100796355 644.425