Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02882 ATGTCCTCTTTCCTACGAAAACCTCTCAGGACTAAGGGCTTATCCCTGTTTCTGCACAAACTCCTCGGAAACTCGTCCCAGTCGCATCGCATTCTAGCTTCATCAACCTCGTTTTGCTCACTTCCTCACCATCCCACTCCTTTCTTCGCTTCAAATTCGGTCCCAAGTGCCATCCACTCTAACGCCTCTCTTCAATTTCGCTTCTGGGCCTCTGAGGCCGCCGCCACCGAACCCTCAACCTCCGATGGGCTCACGGTCCAAGGAATTCTGGCCCATAATTGGACCATTCTCGACGAAAACGACAGCGATTGGAAGAGTCACGCCGCCGCCGTAGCTCAATCGATTCATTTGATCAAACGTCGCTTACAGTGGAGGAAATTGAAGGTGAGGTTGGATATGTTATCTGCTCAGGTGAATAAGGAAGACCTTTGGGATGATCCAGTGCGTGCGGGTAAAATAAGCCGAGAGCACGGTTCGCTCCTAGGGAAAATGAAGGTGGTAAATGCATTGGAACAAGAGTTACTTGAGCATATTGACATGATAAAGCTTGCGCGCGAAGAGAATGATGCGGATTTGGAATCGGAATCATTGAAAGCGTTGCTTAACATGAGAAGGAATGCAAAAGAGAAAGAGCTAGAGGCATTGCTTTCTGGGGAGCAAGATTCTTGTTCATGTTACATTGAGGTTGTTCAACCTGGAGCTGGGGGTACTGAGAGCATGGACTGGGCTGCAATGGTTATGCAGATGTATAAGTCCTGGGCAAAGCAACGTGGATATAAAGTAACTGTAATCGATGAAATGCCTGGTGAGATTGCAGGAATCAAGCGAGCCACCATCAAAGTAGATGGGGAGTTTGCATTTGGATATGCCAAAGCAGAAATAGGAGTGCACAGGCTAGTGCGCATATCACCGTTTGACAGTAGTAAGCGCCGGCACACTTCATTCGCTGCCGTGGCAGTGATTCCAATCCTTGGTGAGGGATCTACTCATGTACAAATTAATGAAACTGATCTTCGAATTGAACGATTTCGTGCTGGTGGTGCTGGTGGCCAACATGTTAACACGACTGAAAGTGCTGTAAGAATAACTCATATTCCTACAGGAGTTACTGCAACTTGTCAGAATGAAAGATCGCAACATCTGAATAAGGCTTCAGCGATGGCTGTGCTTCAGTCAAGATTAGACCAATTGGAGATGGCACGCCAGTCTCAGTTGAATGCACAGCATACACAATCTCTCACTGACATAACTTGGGGCAATCAGATTCGAAGTTATGTTCTCCATCCTTACCGTATGGTGAAAGATCTTAGAACTAACTATGAGGTTTCTGATCCTGACTCTGTCCTTGAGGGAGATCTAGACGCGTCTGAGGCAAAGTCAGCTGTCCTTTCTGTTTCTGTTACTGGCATTCCTCATCAAGGTCTATCAGAATATAAAGGAAGCATATTTGGGCTGCCTATGATTCCGTTTTACCGTTACTGCCATGCCATGGATTTCCAGAAGAAGAAGGTTCAGTTTCTAGCCTTTGTCGCTGTCATCATTGCTCTTAGCATCATAGCTGAAAAAGGCAGGCATGTTGTTGGGGAGAAGGGGTCATCTCAGAGTGGAAAGTTTACATTCCTAAATTGCTTTGACATGACTTCTGGAACTTTAGCATTCAGTGTAAAGGAAAGTGTGAAGCTCTACTTCTACAATCTTAGGGCTGCTCACGTTGAAGGAGCAAGGAATGATGCAATGCAATCTGCTCTTGTTGATGCTGTGAGTAAGGGAATGTCACAAAGTGCTTCAGCAAAATATGCCAAGAAAGAAGGTGAGAAGGCAGCAAAATTGGCTTCTCGCAAAGCCAAGCGCATTGTGGGTCCCATCATGTCTTCAGGATGGGATTTTATTGAGGCTGTGTATTATGGTGGAACTTTCACAGAGGGATTCTTCAAGGGAAGTAGTACTTTGGTTGGAACTTATGCTGGAGGTTTCTTTGGAGAACAAAGGCTTGGCAGATTTGGTTATCTTGTTGGAAGTCATATGGGTAGTTGGTTTGGAGCTAGAATAGGACTAATGCTATATGATGTGGCCAATGGACTCCGTTTCTTGTTGCATTCTGTTTAA 2106 0.4558 MSSFLRKPLRTKGLSLFLHKLLGNSSQSHRILASSTSFCSLPHHPTPFFASNSVPSAIHSNASLQFRFWASEAAATEPSTSDGLTVQGILAHNWTILDENDSDWKSHAAAVAQSIHLIKRRLQWRKLKVRLDMLSAQVNKEDLWDDPVRAGKISREHGSLLGKMKVVNALEQELLEHIDMIKLAREENDADLESESLKALLNMRRNAKEKELEALLSGEQDSCSCYIEVVQPGAGGTESMDWAAMVMQMYKSWAKQRGYKVTVIDEMPGEIAGIKRATIKVDGEFAFGYAKAEIGVHRLVRISPFDSSKRRHTSFAAVAVIPILGEGSTHVQINETDLRIERFRAGGAGGQHVNTTESAVRITHIPTGVTATCQNERSQHLNKASAMAVLQSRLDQLEMARQSQLNAQHTQSLTDITWGNQIRSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDASEAKSAVLSVSVTGIPHQGLSEYKGSIFGLPMIPFYRYCHAMDFQKKKVQFLAFVAVIIALSIIAEKGRHVVGEKGSSQSGKFTFLNCFDMTSGTLAFSVKESVKLYFYNLRAAHVEGARNDAMQSALVDAVSKGMSQSASAKYAKKEGEKAAKLASRKAKRIVGPIMSSGWDFIEAVYYGGTFTEGFFKGSSTLVGTYAGGFFGEQRLGRFGYLVGSHMGSWFGARIGLMLYDVANGLRFLLHSV 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02882 701 Coils Coil 387 407 - -
Cca03g02882 701 PANTHER PEPTIDE CHAIN RELEASE FACTOR 2 87 455 - -
Cca03g02882 701 Pfam PCRF domain 128 318 IPR005139 GO:0006415
Cca03g02882 701 Pfam RF-1 domain 330 437 IPR000352 GO:0003747|GO:0006415
Cca03g02882 701 SMART PCRF_a_2 182 293 IPR005139 GO:0006415
Cca03g02882 701 Gene3D - 230 454 - -
Cca03g02882 701 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 344 360 IPR000352 GO:0003747|GO:0006415
Cca03g02882 701 TIGRFAM prfB: peptide chain release factor 2 104 455 IPR004374 GO:0005737|GO:0006415|GO:0016149
Cca03g02882 701 Coils Coil 167 187 - -
Cca03g02882 701 PANTHER PEPTIDE CHAIN RELEASE FACTOR PRFB1, CHLOROPLASTIC-RELATED 87 455 - -
Cca03g02882 701 Gene3D Release factor 102 213 - -
Cca03g02882 701 Hamap Peptide chain release factor 2 [prfB]. 100 467 IPR004374 GO:0005737|GO:0006415|GO:0016149
Cca03g02882 701 SUPERFAMILY Release factor 127 455 IPR045853 -
Cca03g02882 701 Gene3D - 324 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02882 Cca-Chr3 50143404 50149640 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02882 K02836 - gmx:100797427 754.592