Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02872 ATGGCAGACTTGGAAAACATGCTTCTTGAGGCAGCTGGAAGGACTAGTTCTCCAGTGAGAAAGAGGCACAAGGGTCGGAACTCAAAGGCGAAACGTGAGGGTGCAGCATTCTCCGATGGTGGAAGTGATTCGAGGGAGGAAGACTCTGATGAGGGTGCAGGCAAGAGGCCACAGAGGTATGCATCACATGTTCCGCTGAAGAAGAGGTTGGACCTCAGCAGAAGAGGTAGTAGTAGTAACAGTGTTCGGAAAGAGCAAGGCGGGGGTGACATGGAGGATGGAGTTCCTGATAGAGATGGTGGCAGCAGTGAAGAATCTGATGTTGGCAGTGATCTCTACAAGGACGATGATGACAGGCAGAACCTCGCAAAGATGACAGAACTTGAAAGAGAGATGATTTTAACTGATAGAGCAACTAAGAAATGTGAAAAGGAGTTCAAAGAGAAAATGAGAAAGAAGAGGGAAAACAAAAGTGCAAAGACTGCTGCACAATCATCTCATCATCCATCATCTAGTAAGGTTCGTTCCTCAGCTAGACATGCTGAGAGGACAGCTTCCAAGGGAGATGTGCTAAGCGAATTGCGTGCAAAAAGGATGAAGCAACAAATCTTAGACCCTCATGATAAATCAGGAAATGCTTCAGGCTCAATTAGCAAGCAGAAACCCGGAATCACAGCAAGTTCAAGTAGCTCTAGCCAGAGTGAGAGTGTAATTCGTTCTGACAGTGAAAGAGACTCATCTGATGATGGTGGATTGGGGGACAGTGATGATGACAAGAACATGCATGAATCAGAGATGCCAACATTTGAAAACATAAGGGAAATTACAATTAGGAGGTCAAAGCTTGTGAAGTGGTTGAATGAACCATTTTTTGAGGAGTTAATTGTTGGCTGTTTTGTGAGAATTGGCATAGGAAAGTCTGAGAGTGGACCTGTCTATAGGCTTTGCATTGTGCAGAGAGTTGATGGGGGTGACCCAAATAAGCATTACAAGGTAGAGAATAGAGTTACTCACAAGTATCTAGTTTGTGTGTGGGGCAGTGAGAATTCTGCTAAAAAGTTTCAGGTGGCTGTGGTTTCAGATTCTGCACCATTGGAGAAAGAGTTCAGACAGTGGGTTAGAGAAGTTGAGAGAACTTGCAGCCAGATGCCAAGTAAGATGAGTGTGTTGGAGAAGAAAGACGCCATAAGAAGAACAAGCACGTATGTTTATTCGGCTGCCACAGTGAAGCAGATGCTAGAGGAGAAAAAATCTGCCCCTTCTAGGCCACTGAACATTGCAGTGGAGAAGGATCGTTTGAAGAACCTGTTGGAGTTGGCAAAAAGTAAGAATGACGAGGCAGAAATCAATAGGATCTTCACAAAGCTAGTGGAATTGGAAGCATCTCGTAAGAGCCGGGAGAATGATGCTAAGGCTTTGAGGCTTGCTGAGATGAACAGGAGGAACAAGGTTGAGAACTTCAAGAACTTGTCTGAACATAAACAGTTGAATTTGAAAGCTGGAGAGGCAGGCTATGATCCCTTTTCGAGGAGGTGGACGAGGTCGAGGAATTATTATGGGAAAGATGCTGAGAAGACTGATGATAAGGAAGAAGAAAAGGATGGTGAAGTTGGTAAGGAGGAAGAAAAAGGTGTTACACCAAAGGTTGGTGTTGAAGTCACTAAATTGGCATTGCAAGCTGCTGCTAATGCAGGGAAGTTGACTGATACCAATGCTCCTGTTGATGGTGGAACAGAATCAAATATGCTGCATGATTTTGACTTGCCAATTTCTTTATCTGAACTTAAGAGTTTTGGTGGACCACAGGGACTCAAAAATGGGTTTCTGGCAAGGAAACAAAAAATAGAAGCAACAGTAGGGTGCAGGGTCCCTGAGAATGATGGTAGTAGGCATGCTCTCACATTAACCATAAGTGACTACAAGAGAAGAAGAGGACTTCTCTGA 1944 0.4429 MADLENMLLEAAGRTSSPVRKRHKGRNSKAKREGAAFSDGGSDSREEDSDEGAGKRPQRYASHVPLKKRLDLSRRGSSSNSVRKEQGGGDMEDGVPDRDGGSSEESDVGSDLYKDDDDRQNLAKMTELEREMILTDRATKKCEKEFKEKMRKKRENKSAKTAAQSSHHPSSSKVRSSARHAERTASKGDVLSELRAKRMKQQILDPHDKSGNASGSISKQKPGITASSSSSSQSESVIRSDSERDSSDDGGLGDSDDDKNMHESEMPTFENIREITIRRSKLVKWLNEPFFEELIVGCFVRIGIGKSESGPVYRLCIVQRVDGGDPNKHYKVENRVTHKYLVCVWGSENSAKKFQVAVVSDSAPLEKEFRQWVREVERTCSQMPSKMSVLEKKDAIRRTSTYVYSAATVKQMLEEKKSAPSRPLNIAVEKDRLKNLLELAKSKNDEAEINRIFTKLVELEASRKSRENDAKALRLAEMNRRNKVENFKNLSEHKQLNLKAGEAGYDPFSRRWTRSRNYYGKDAEKTDDKEEEKDGEVGKEEEKGVTPKVGVEVTKLALQAAANAGKLTDTNAPVDGGTESNMLHDFDLPISLSELKSFGGPQGLKNGFLARKQKIEATVGCRVPENDGSRHALTLTISDYKRRRGLL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02872 647 MobiDBLite consensus disorder prediction 238 267 - -
Cca03g02872 647 MobiDBLite consensus disorder prediction 175 205 - -
Cca03g02872 647 PANTHER UNCHARACTERIZED 1 647 - -
Cca03g02872 647 MobiDBLite consensus disorder prediction 30 57 - -
Cca03g02872 647 MobiDBLite consensus disorder prediction 1 267 - -
Cca03g02872 647 MobiDBLite consensus disorder prediction 523 545 - -
Cca03g02872 647 Gene3D - 266 399 IPR036128 GO:0003677
Cca03g02872 647 PANTHER PLUS-3 DOMAIN PROTEIN 1 647 - -
Cca03g02872 647 MobiDBLite consensus disorder prediction 86 161 - -
Cca03g02872 647 SUPERFAMILY Plus3-like 268 397 IPR036128 GO:0003677
Cca03g02872 647 SMART rtf1 266 378 IPR004343 GO:0003677
Cca03g02872 647 Coils Coil 426 450 - -
Cca03g02872 647 MobiDBLite consensus disorder prediction 207 237 - -
Cca03g02872 647 ProSiteProfiles Plus3 domain profile. 266 401 IPR004343 GO:0003677
Cca03g02872 647 Pfam Plus-3 domain 271 376 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02872 Cca-Chr3 49991237 49993180 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02872 K15178 - gmx:100793188 917.146