Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02862 ATGGGTTGTGGCGGAGTGCAGGTATTGATCTTAGTGTTTTTATGGAACGTGTCATTGGGATTGGGAGGGTGCGATAAGGCTCCGCTGGTGTTCGTCTTCGGCGATTCCAACTCGGACACGGGTGGACTCGCCTCCGGACTCGGTTTCCCCATCAATCTTCCCAATGGCCGCACCTTCTTCCGCAGATCCACCGGCCGCTTGTCCGATGGTCGCCTCGTCATCGACTTACTCTGCCAAAGTTTGAATGCAAGTTTGTTGGTACCATACATGGACGCTTTGTCTGGATCATCATTCACAAATGGGGCAAATTTTGCAGTGGTGGGGTCCTCTACCCTCCCAAAATATGTTCCTTTCTCCCTAAATATACAGCTCATGCAATTCCAGCATTTCAAAGCCCGTTCGCTTGAACTTGTTACCGCAGGTGCAAGAAATTTGATCAACGATGAAGGCTTTCGGAGTGCACTCTACTTGATTGATATTGGGCAAAACGACCTTGCTGATTCATTTGCCAAAAATCAGTCATATGCCCAAGTCACCAGGAAGATTCCAGCATTTATAACTGAAATTGAGACTGCTGTTAGGAGTTTATATAATCAAGGTGCAAGGAAGTTTTGGGTTCACAATACCGGGCCATTGGGTTGTCTTCCAAAAATACTTGCACTGGCTAAGAAGAAGGATCTGGATTCATTAGGATGCCTTTCTAGTTATAACTCTGCAGCAAGGTTGTTCAATGAAGCGCTGCTTCATTCGAGTCAGAAACTAAGAACTGAACTGAAGGATGCTACTTTAGTCTATGTTGATATTTATGCCATTAAACATGATCTCATCACAAATGCCGTGAAATATGGTTTCTCAAATCCGTTGATGGTGTGTTGCGGCTATGGAGGGCCTCCTTACAATTTTGACGTAAGGGTGACATGTGGTCAACCTGGTTATCAGGTTTGTAATGAAGGGTCTCGCTATGTGAGTTGGGATGGAATTCATCACACTGAGGCTGCAAATACGTTGATAGCTTCTAGGATACTTTCCATGGCTTATTCCACACCACGGACACCTTTTGATTTCTTCTGCCACCACTGA 1080 0.4546 MGCGGVQVLILVFLWNVSLGLGGCDKAPLVFVFGDSNSDTGGLASGLGFPINLPNGRTFFRRSTGRLSDGRLVIDLLCQSLNASLLVPYMDALSGSSFTNGANFAVVGSSTLPKYVPFSLNIQLMQFQHFKARSLELVTAGARNLINDEGFRSALYLIDIGQNDLADSFAKNQSYAQVTRKIPAFITEIETAVRSLYNQGARKFWVHNTGPLGCLPKILALAKKKDLDSLGCLSSYNSAARLFNEALLHSSQKLRTELKDATLVYVDIYAIKHDLITNAVKYGFSNPLMVCCGYGGPPYNFDVRVTCGQPGYQVCNEGSRYVSWDGIHHTEAANTLIASRILSMAYSTPRTPFDFFCHH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02862 359 Pfam GDSL-like Lipase/Acylhydrolase 30 341 IPR001087 GO:0016788
Cca03g02862 359 Gene3D SGNH hydrolase 25 347 IPR036514 -
Cca03g02862 359 PANTHER OS01G0329900 PROTEIN 9 358 - -
Cca03g02862 359 SUPERFAMILY SGNH hydrolase 30 343 - -
Cca03g02862 359 CDD SGNH_plant_lipase_like 28 343 IPR035669 -
Cca03g02862 359 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 9 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02862 Cca-Chr3 49929694 49932818 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02862 27 348 Acyl Lipid Metabolism Gene Families AT4G10950 26.239 1.29e-27 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02862 - - gmx:100797617 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02862 03 49929694 49932818 Cca03g02862 03 49929694 49932818 ECH