Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02857 ATGCACGTGCCTTCCGCTTCTCTATCTGGATACTCTGTGGCCATGAATAGCTTAACGGCGAGTTTCGCAGCTCGATTATGTGCCACGCGCCGCGACCTACGCCCTATACGACGCCGTCCCCTTCATCGTTTTACTATCACACGCGTCGCCACCAAACTCACACCTCCAAGAATCGTTTGCATGGCGGAACCTTATCTGATTACGAAGCTGGAGTCTGCTGAGAAAACCTGGAAAGAATTATCGGTATGTATGCCACTACGCGCTATGCTTCCATTTTCTGCAAAGAATTTTGTCTCAAAGCTGAAATTTCAGGTCAAGCTTGCTGATCCAGACATTGTTTCTGATCCAAAGGAGTACCAGAAGTTAGCACAATCAGTGTCAGAACTTGATGAGGTTGTGTCCACGTACAGGAGATTTAAAGAGTGTGAGAAGCTTCTAGAAGAAACCAAAGGTTTAGCGAAGGATGATGGAAACGATGAGGATATGGTGGAAATGATATCTTATGAAATCGACTCTTTGTCCAAGCAACTCGCAGAGCTTGAGGACAAGCTTAAGGTGTTACTGCTTCCCAGTGATCCTCTGGATGCTAGAAACATAATGCTTGAAGTACGAGCAGGCACTGGTGGTGACGAGGCTGGAATATGGGCTGGTGATCTTGTCAAAATGTATGAAAAATACAGTGAACGAAATTCTTGGAAATATTCTGTGGTCTCAAGTTCTGCGGCAGAAAAAGGAGGATACAAAACTTATGTGATGGAGATAAAAGGAAACCGTGTTTACAGTAAATTGAAATATGAATCTGGTGTCCACCGAGTTCAACGTGTTCCCCTAACAGAAACGCAGGGCAGGGTTCATACTTCTACAGCAACAGTAGCCATCATGCCAGAGGCTGATGAAGTTGAAGTCACAATTGATCCAAAAGATATTGAACTGACGACGGCTCGTTCTGGGGGTGCTGGAGGCCAGAATGTCAACAAGGTTGAAACAGCCATTGATCTTTTCCATAAACCAACGGGAATCCGGATATTTTGTACTGAAGAAAGGACGCAACTTCAGAACAGAAACCGTGCTTTTCAGTTGCTCCGAGCAAAACTGTATGAGATAAAGGTAAGGGAGCAGCAAGAGTCAATACGAAATCAAAGGAAATCACAGGTCGGTACAGGTGCACGTGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGAGTTACTGACCACAGATTGAAGATGAACTATGAGCTCACCTCTTTTCTTGGTGGAGATATAGAAGATGCTGTTCAGTCTTGTGTTACAATGGAGCAAAAGGAACTTCTGGAAGAACTTGCTGAATCAGTTGGTGCTCCGGCTGGCTGA 1356 0.4462 MHVPSASLSGYSVAMNSLTASFAARLCATRRDLRPIRRRPLHRFTITRVATKLTPPRIVCMAEPYLITKLESAEKTWKELSVCMPLRAMLPFSAKNFVSKLKFQVKLADPDIVSDPKEYQKLAQSVSELDEVVSTYRRFKECEKLLEETKGLAKDDGNDEDMVEMISYEIDSLSKQLAELEDKLKVLLLPSDPLDARNIMLEVRAGTGGDEAGIWAGDLVKMYEKYSERNSWKYSVVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQGRVHTSTATVAIMPEADEVEVTIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIRIFCTEERTQLQNRNRAFQLLRAKLYEIKVREQQESIRNQRKSQVGTGARAEKIRTYNYKDNRVTDHRLKMNYELTSFLGGDIEDAVQSCVTMEQKELLEELAESVGAPAG 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02857 451 Pfam RF-1 domain 298 408 IPR000352 GO:0003747|GO:0006415
Cca03g02857 451 Gene3D - 101 193 - -
Cca03g02857 451 ProSitePatterns Prokaryotic-type class I peptide chain release factors signature. 315 331 IPR000352 GO:0003747|GO:0006415
Cca03g02857 451 PANTHER PEPTIDE CHAIN RELEASE FACTOR APG3, CHLOROPLASTIC 36 449 - -
Cca03g02857 451 Coils Coil 163 183 - -
Cca03g02857 451 PANTHER LD18447P 36 449 - -
Cca03g02857 451 Pfam PCRF domain 103 291 IPR005139 GO:0006415
Cca03g02857 451 Gene3D - 195 307 - -
Cca03g02857 451 TIGRFAM prfA: peptide chain release factor 1 102 444 IPR004373 GO:0006415|GO:0016149
Cca03g02857 451 SUPERFAMILY Release factor 103 439 IPR045853 -
Cca03g02857 451 Gene3D - 368 446 - -
Cca03g02857 451 SMART PCRF_a_2 151 266 IPR005139 GO:0006415
Cca03g02857 451 Hamap Peptide chain release factor 1 [prfA]. 66 443 IPR004373 GO:0006415|GO:0016149
Cca03g02857 451 Gene3D - 308 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02857 Cca-Chr3 49895443 49900398 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02857 K02835 - gmx:100777225 767.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02857 03 49895443 49900398 Cca03g02857 03 49895443 49900398 ECH