Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02856 atgctccaccgcatcacccactcctcttcttcctctcttctcctccttccccgtcttctctctcaccactctctcccttcCAATTTCAAATTCCCACCAAAACCTCTCACTCTCTCACTCAGACTCCTCTCCATGGCATCATCTCACAAACACACCAACCGCCTCGCTTCCGAACAGAGCCCTTACCTTCTCCAACACGCTCACAACCCCGTTGATTGGTATCCCTGGGGCCAAGAAGCCTTCGCCGAAGCGCGCCGCCGAGACGCGCCTATCTTCTTGTCAATTGGTTACAGCACTTGTCACTGGTGTCATGTTATGGAGGTCGAGTCTTTCGAGGACGAAGCGGTTGCCAACCTGTTGAACGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGCGACCAGATGTTGATAAGGTATACATGTCGTATGTACAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGAGTGTGTTTCTTTCACCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAGTATGGACGACCTGGATTTAAGACTATACTTAGAAAGGTAAAAGAGGCCTGGGACAGTAAGAGGGATATGCTAATTAAGAGTGGATCATATGCAATTGAACAGCTTTCTGAGGCAATGTCTGCTAGTTCTGATTCTGATAAACTGCCTGATGGGGTTCCCGCCGAAGCAATACATCTATGCTCAGAGCAGCTCTCTGGGAGCTATGATTCAAAGTTCGGTGGGTTTGGATCTGCACCAAAGTTTCCCAGACCAGTTGAGGTCAACTTGATGCTTTATCACTCCAAAAAGTTGGAAAATATGGGGAAGTTGGATGGAGCTGATGGAAGTAAGAAAATGGTTTTGTTTAGCTTGCAATGCATGGCAAAAGGTGGGATTCATGATCATATTGGAGGGGGGTTTCACAGGTACAGTGTGGATGAGTGCTGGCATGTTCCACATTTTGAGAAGATGCTATATGATCAAGGGCAGCTTGCTAATGTTTATCTAGATGCATTTTCTATCACAAAAGATACCTTTTATTCATATATATCACGGGATATCCTCGATTATTTAAGGAGAGATATGATTGGTCCAGAAGGTGAAATCTTTTCAGCAGAGGATGCTGACAGTGCTGAGACTGAAGGGGCTGCAAGAAAAAAGGAAGGAGCCTTTTACATATGGACAAGCAAAGAGGTTGAAGACATACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATCAAGCAACCGGGTAACTGTGACCTATCTGGAATGAGTGATCCTCACGATGAATTCAAGGGAAAGAATGTCCTGATTGAGAGAAAGGAATCTTCAGAAATAGCATCAAAATATGGCATGTCAGGTGAGACATATCAAGGCATTCTTGGAGAATGTAGGCGTAAGTTATTCGAAGTAAGGTCAAGGCGTCCAAAGCCACATTTGGATGATAAGGTTATTGTATCTTGGAATGGACTGGCAATCTCAGCTTTTGCTAGGGCTTCTAAGATTCTCGAGGGTGAACCTGAAGGGACCAAATTCTACTTTCCTGTTGTTGGCACTGAACCAAAGGAATACATGAGAATTGCAGAAAGAGCAGCATTCTTTATTAGAAATCAACTTTACAATGTGGAGACTCACAGGCTACACCATAGTTTCAGACGTTCTCCATCAAAAGCTCCTGGTTTCTTGGATGATTATGCTTTTCTGATTTCTGGGTTGCTGGATCTCTATGAGTTTGGCGGTGGAATTAACTGGCTTATATGGGCCATTGAATTGCAGGAAACCCAGGATGCTTTGTTTCTTGATAGAGATGGAGGCGGGTATTTCAATAATACAGGAGAAGATTCTTCAGTTCTCCTCCGCGTGAAGGAAGACCATGATGGGGCAGAACCCTCTGGAAACTCAATTTCTGCTATTAATCTTATAAGATTGGCTTGCATGGTTGCTGGAAGTAAGGCTGAGCATTATAAGAAAAATGCAGAGCATCTATTGGCAGTTTTTGAGAAAAGATTGAAAGATATGGCTATGGCAGTGCCTCTAATGTGTTGTGCAGCAGACATGTTGCGTGTACCTTCTCGGAAGGAAGTGGTCGTGGTTGGTGAAAGGACGTCCAAGGAATTTGAACACATGCTTGCTGCTGCTCATGCATTATATGATCCCAACAGAACAGTTATTCATATAGATCCCAATAACAAAGAAGAGATGGAATTTTGGGAAGTTAATAACAGCAATATTGCTCTCATGGCGAAAAATAACTATGCTGTCAACAAGGTTGTGGCTCTTGTATGCCAAAACTTCACTTGTAGCCCCCCAGTCACTGATCATGCGTCACTTGAAGCTTTACTCTCCAAAAAACCTTCCTCTTCGTTCACATAA 2394 0.4223 MLHRITHSSSSSLLLLPRLLSHHSLPSNFKFPPKPLTLSLRLLSMASSHKHTNRLASEQSPYLLQHAHNPVDWYPWGQEAFAEARRRDAPIFLSIGYSTCHWCHVMEVESFEDEAVANLLNDWFVSIKVDREERPDVDKVYMSYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPDDKYGRPGFKTILRKVKEAWDSKRDMLIKSGSYAIEQLSEAMSASSDSDKLPDGVPAEAIHLCSEQLSGSYDSKFGGFGSAPKFPRPVEVNLMLYHSKKLENMGKLDGADGSKKMVLFSLQCMAKGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANVYLDAFSITKDTFYSYISRDILDYLRRDMIGPEGEIFSAEDADSAETEGAARKKEGAFYIWTSKEVEDILGEHAALFEEHYYIKQPGNCDLSGMSDPHDEFKGKNVLIERKESSEIASKYGMSGETYQGILGECRRKLFEVRSRRPKPHLDDKVIVSWNGLAISAFARASKILEGEPEGTKFYFPVVGTEPKEYMRIAERAAFFIRNQLYNVETHRLHHSFRRSPSKAPGFLDDYAFLISGLLDLYEFGGGINWLIWAIELQETQDALFLDRDGGGYFNNTGEDSSVLLRVKEDHDGAEPSGNSISAINLIRLACMVAGSKAEHYKKNAEHLLAVFEKRLKDMAMAVPLMCCAADMLRVPSRKEVVVVGERTSKEFEHMLAAAHALYDPNRTVIHIDPNNKEEMEFWEVNNSNIALMAKNNYAVNKVVALVCQNFTCSPPVTDHASLEALLSKKPSSSFT 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02856 797 SUPERFAMILY Thioredoxin-like 51 194 IPR036249 -
Cca03g02856 797 SUPERFAMILY Six-hairpin glycosidases 241 635 IPR008928 GO:0005975
Cca03g02856 797 CDD SSP411 74 196 IPR004879 -
Cca03g02856 797 PANTHER SPERMATOGENESIS-ASSOCIATED PROTEIN 20 45 790 IPR024705 -
Cca03g02856 797 Gene3D - 523 739 IPR012341 GO:0005975
Cca03g02856 797 PIRSF UCP006402_thioredoxin 36 795 IPR024705 -
Cca03g02856 797 Pfam Protein of unknown function, DUF255 52 213 IPR004879 -
Cca03g02856 797 Gene3D Glutaredoxin 50 222 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02856 - - gmx:100777751 1446.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02856 03 49887436 49893764 Cca03g02856 03 49887436 49893764 ECH