Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02850 ATGTATTCTCGTTGCTTTGATGACAACAGAGCAGACAATGAAGGGAATTCTGCTGAAGGATTTGGAGATCCAGAACTGGTGCCTCGTGTTGGAGACGAGTACCAGGCAAAAATTCCTTCTTTGATTACAGCACCTTATCTTTCTCAGCTTGTAAAAAAGACAACAGATTCAGAAATAAAAGTCAACTTGGAAGAGTCTATTTCACTAGGATTGCCCATTCCTCTTAAGTGGGGTCATTGCAAATTTGAAGGCAGTTGTGGTTGTGGGACTTTAGAATCTGTCACAAGTGAAGCGGGACCAGTTATTTCTGGGCATGAATGTCCAGAAGTTAGAGTGGAACTTCACACTGCTACACATGGTGAAGATAAAAATGATGGAGGGTTCACAAATTTTGAATCATCTAAAAGTGACGAGAAGGATCCGCCAAGAGGCAACTATCTTCTCCCTGGATTGTTGTATAATCAATCTTGGACAGATACTGAATATAACAGTTTTCTTCTTGGCCTCTATGTATTTGGGAAGAACCTTAATTTTTTGAAGAGATTTGTTGGGAGTAAAAATATGGGAGACATATTGTTTTTCTATTATGGAAAGTTTTTTAAGTCTAAAGAATATGGCCGATGGTCAGAGTGCCGAAAGCTGAGAACTAAGAGGTGTATATATGGCCAGAAAATATTCACAGGATGGAGGCAACAAGAATTGCTGTCAAGATTATTTTCCCACGTGCCAAGGGAGTGTCAAACTACATTGGTCGAGATTTCAAGGAAATTTGGGGAGGGAAAGATGCCTTTTGAAGAATACGTATTTGCTTTAAAGGATGCAGTTGGCATTGATCTGCTCATAGCTGCTGTAGGTATTGGAAAAGGGAAACAAGATCTCACAGGCACTGCTGTTGAGCCACCAAAGACCAATCACGTATTCTCTGTTCGCCATGAAATACCAATCGGCAAAGCTTGCTCCTCTCTAACATCTGCAGATATAATCAAGTTTCTCACAGGAGATTTTAGGTTGAGTAAAGCTCGATCCAGTGATCTCTTCTGGGAAGCTGTTTGGCCACGTCTTTTAGCTAAAGGTTGGCATTCTGAACAACCTAAAGATCAAGTTGTTTCTGGATCAAAACAATCTTTGGTTTTTCTTATACCTGGTGTTAAGAAATTTTCAAGAAGGAAACTGGTAAAAGGTAACCAGTACTTTGATTCTATAAGTGACGTATTGAATAAAGTAGCATCTGACCCTGGGCTTCTCGAGACTGAAAGTCAAGCAATTGAGGGCGGTGTAGATAGGGAAAAACATCAAGACAAACGAGACCTAGAGGGTGTGTCAAATACTCAACAATTTCATCACCTTCAATCCCATAGTTCAAAGTGCAATCAAGATCTCACAAAATTTACAATTGTAGATACCAGCATGGTTCATGATATGAATCAACGTAAGGTGAGACAGACGAGAAGCTTACCTTTTCAACCCATGAGTATATCTACCATCTCAAGCTGTTCTAGTGAATCTGAGCAAGATACATCTGAAGACTCGGAAGATCATGTTGAACATGCTAATGCTTCAAGCCCTATCAAAGATCAAGTTGAACGAGTTAATTCTTCATATCCTATTGAAGATCAGGTTGAACAAGCTAATGCTTCAAGCCCTATTGAAGATCAAGTTGAGCAAGCTAGTTCTTCATATCCTATGGAAAATCAGGTTGAACAAGCTAATTCCTCCAACCCCACTGAAGAATTCTATGATAAAGTGTTGAATATAGACTCTTTAGATTGTACTCGTGTTCCTGAGGTCCTCAATACCACTGAAGAAGTAAAAAATCATAGATGTCATTCTGATCTGCATAATGATGAGCATTCAAGAGAGATCAATGAGCATCCGTTGCTTCAAAAGATGACATCTGATTGCACAATTCCCTGCATCACGGCAGTGCAGAAGTTAAGAGCTTGTAACCATGGAGATTTTAGCCACTGCACTGAAAGTACTTCTGGGGATAGAAAGTTTGATTTAAATGAACCAGTCTCACCATCAAGTCTGCATCAAGCATCTGATGGCATGGTTTTGTCTATGGGTTTAGAAAATTTGTCTTTCCCAAGTTATCTGGCCAAAGGCAGTCCAAATGTGAGCAATGAAGGCAGTGTCACTGAGAACCATCCGGTTGGAGAAGTATCAGCAGAAAATTCTGAAACCAGGATGTTGATTGACTTGAATTTTCCTGAAGTTTCACCCGATTTAGGACTTGAAATGGAAATACCATCCTCTATGGTCATATTGCAAAATGACAACCAATGCGCAAATACATCGTCTTCTCCATCTGAGATAACCCAGTTCAATGCGACACAGGAGTTTCCTGATGGTAGTAAGGAGCAGCAATCTATCCTTGGCAACCGTCGCCAGAGCACAAGGAACCGACCCTTGACCACAAAAGCATTGGAAGCTCTTGAGTACAGATTTATCAACTCAAAGAGGAAAAGAAAGAACACAGAATGTTCAGACAATAATTCAAAGTCCAAATGTGTACGTGAAAGTAGTGAGACAATTATTAATGCTACTTGTGATAATGGCATTGGGAATTCTTTGGCTGATACAAGAGCAGAGGAGGAGAATGTTATCCAGGCATATAGCTGTAGCTTCAATCTGAATAGAAGCCCACTATAA 2652 0.4005 MYSRCFDDNRADNEGNSAEGFGDPELVPRVGDEYQAKIPSLITAPYLSQLVKKTTDSEIKVNLEESISLGLPIPLKWGHCKFEGSCGCGTLESVTSEAGPVISGHECPEVRVELHTATHGEDKNDGGFTNFESSKSDEKDPPRGNYLLPGLLYNQSWTDTEYNSFLLGLYVFGKNLNFLKRFVGSKNMGDILFFYYGKFFKSKEYGRWSECRKLRTKRCIYGQKIFTGWRQQELLSRLFSHVPRECQTTLVEISRKFGEGKMPFEEYVFALKDAVGIDLLIAAVGIGKGKQDLTGTAVEPPKTNHVFSVRHEIPIGKACSSLTSADIIKFLTGDFRLSKARSSDLFWEAVWPRLLAKGWHSEQPKDQVVSGSKQSLVFLIPGVKKFSRRKLVKGNQYFDSISDVLNKVASDPGLLETESQAIEGGVDREKHQDKRDLEGVSNTQQFHHLQSHSSKCNQDLTKFTIVDTSMVHDMNQRKVRQTRSLPFQPMSISTISSCSSESEQDTSEDSEDHVEHANASSPIKDQVERVNSSYPIEDQVEQANASSPIEDQVEQASSSYPMENQVEQANSSNPTEEFYDKVLNIDSLDCTRVPEVLNTTEEVKNHRCHSDLHNDEHSREINEHPLLQKMTSDCTIPCITAVQKLRACNHGDFSHCTESTSGDRKFDLNEPVSPSSLHQASDGMVLSMGLENLSFPSYLAKGSPNVSNEGSVTENHPVGEVSAENSETRMLIDLNFPEVSPDLGLEMEIPSSMVILQNDNQCANTSSSPSEITQFNATQEFPDGSKEQQSILGNRRQSTRNRPLTTKALEALEYRFINSKRKRKNTECSDNNSKSKCVRESSETIINATCDNGIGNSLADTRAEEENVIQAYSCSFNLNRSPL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02850 883 MobiDBLite consensus disorder prediction 1 25 - -
Cca03g02850 883 PANTHER ATROPHIN-RELATED 16 871 - -
Cca03g02850 883 MobiDBLite consensus disorder prediction 477 527 - -
Cca03g02850 883 SUPERFAMILY Homeodomain-like 156 200 IPR009057 -
Cca03g02850 883 MobiDBLite consensus disorder prediction 777 803 - -
Cca03g02850 883 ProSiteProfiles SANT domain profile. 152 203 IPR017884 -
Cca03g02850 883 PANTHER ARGININE-GLUTAMIC ACID DIPEPTIDE REPEAT PROTEIN 16 871 - -
Cca03g02850 883 MobiDBLite consensus disorder prediction 480 503 - -
Cca03g02850 883 MobiDBLite consensus disorder prediction 118 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02850 Cca-Chr3 49809471 49815076 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02850 - - gmx:100807168 1414.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02850 03 49809471 49815076 Cca03g02850 03 49809471 49815076 ECH