Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02846 ATGGCGAGTTGTGGTTTGACGGAGAGCGTTGCGGTTCTTGTGCTGGAGAAATGCCGTAGTTCGATTCAGCTCCGGCAGATTGAAGCGCAACTGATCCGCCACGGCCTCCACTGCAACACGAGAATCGGCCACCGCTTCATCGGCGCGTGCCAATCCCACGGCCTTCTCAGCTCCGCCCTTCTCCTCTTCACCACCCTCCCACCGACCCCCCACATTTTCATCTTCAACACCCTCATCAAAGCCTTATCCCAATGCCAAACCCTAACCCCTCTCTTAATATACTCCCACATGCGCCGAAGCTGCCTCCTCCCCAACAACTTCACCTTCCCTCCCCTCTTCAACTCCCTCTCCCACACCCGCCACGTCACCCACGCCCAATGCCTCCACACCCACGTCCTCACCCTCGGCCACCACCGCGACCTCTTCGTCCACAACTCCCTCCTCCACCTCTACGCCTCCTCCCGCCACGTCTCCCTCTGCCGTCGCCTGTTCGACGAAATGCCCCACAACGACGTCGTATCCTGGACCGTCCTCATCGCCGCCTACAACAACGTTGGGGACCATACTCGTTCCCTTCTCGTCTTCCAACAAATGCAGTACGCGGGTTTCGCGCCTAATAGGGTGACCATGATAAACGCGTTGGACGCCTGTGCTCACTCTGGTAACATCGAAATGGGGGAGTGGATACACGGTGCCGTCAAGAGGGACGGGTGGGAAGTGGATGTGGTGTTGGGGACGGCGTTGATTGACATGTATGTCAAGTGTGGGAGAGTGGAGGAGGGGTTGGGTGTGTTTTGGAGGATGAAGGATAAGAATGTGTTTACTTGGAATGCGGTTATTAAAGGCTTGGCTCTGGCCAAGAGTGGACACGAGGCCATTTGGTGGTTTAAGAGAATGGAGAGTGACGGGGTTAGGCCTGATGAAGTGACTTTGTTGGCGGTGTTATCTGCGTGTAGTCACGCGGGTTTGGTGGACCAGGGTAGAGAGGTTTTTCGTTTGTTGCTTGATGGGAGCTATGGGTTTCTTCCTAATGTCAAGCACTATGCTTGTATGGTTGATGTGTTGGCGCGTTCTGGCCATTTGAAAGAGGCTGTTGAATTCATGGGGAGTATGCCTTTTGAGCCAACCAAAACTATGTGGGGATCTTTGTTGGCTGCTTGTAAGTCGCAGGGTGCCTTGGAGTTGGGCCTGCTGGCGGCTACAAAGCTCCTTCAAATGGAGCCTGAGAACACTGCCTATTATGTCCATTTGTCAAATTTGTATGCGGCCATGGGGAGATGGAGCGATGTTGAGAAAGTAAGAGGGGTGATCAAGGATAGACACCTCACTAAGGACTTGGGGTGTAGTTCCGTGGAGGTAGAACATCAGAGTCATGTTAGTGAACTTTTCGCATAG 1395 0.5398 MASCGLTESVAVLVLEKCRSSIQLRQIEAQLIRHGLHCNTRIGHRFIGACQSHGLLSSALLLFTTLPPTPHIFIFNTLIKALSQCQTLTPLLIYSHMRRSCLLPNNFTFPPLFNSLSHTRHVTHAQCLHTHVLTLGHHRDLFVHNSLLHLYASSRHVSLCRRLFDEMPHNDVVSWTVLIAAYNNVGDHTRSLLVFQQMQYAGFAPNRVTMINALDACAHSGNIEMGEWIHGAVKRDGWEVDVVLGTALIDMYVKCGRVEEGLGVFWRMKDKNVFTWNAVIKGLALAKSGHEAIWWFKRMESDGVRPDEVTLLAVLSACSHAGLVDQGREVFRLLLDGSYGFLPNVKHYACMVDVLARSGHLKEAVEFMGSMPFEPTKTMWGSLLAACKSQGALELGLLAATKLLQMEPENTAYYVHLSNLYAAMGRWSDVEKVRGVIKDRHLTKDLGCSSVEVEHQSHVSELFA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02846 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 272 306 IPR002885 -
Cca03g02846 464 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 456 - -
Cca03g02846 464 TIGRFAM PPR: pentatricopeptide repeat domain 143 172 IPR002885 -
Cca03g02846 464 TIGRFAM PPR: pentatricopeptide repeat domain 274 308 IPR002885 -
Cca03g02846 464 Pfam PPR repeat 348 371 IPR002885 -
Cca03g02846 464 Pfam PPR repeat 143 170 IPR002885 -
Cca03g02846 464 Pfam Pentatricopeptide repeat domain 171 209 IPR002885 -
Cca03g02846 464 Pfam E motif 393 452 IPR046848 -
Cca03g02846 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Cca03g02846 464 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 271 IPR002885 -
Cca03g02846 464 Pfam PPR repeat family 271 319 IPR002885 -
Cca03g02846 464 PANTHER - 13 456 - -
Cca03g02846 464 Gene3D Tetratricopeptide repeat domain 226 337 IPR011990 GO:0005515
Cca03g02846 464 Gene3D Tetratricopeptide repeat domain 338 460 IPR011990 GO:0005515
Cca03g02846 464 Gene3D Tetratricopeptide repeat domain 5 132 IPR011990 GO:0005515
Cca03g02846 464 Gene3D Tetratricopeptide repeat domain 133 225 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02846 Cca-Chr3 49788956 49790709 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02846 104 458 Glycoside Hydrolase AT3G49170 32.113 2.48e-62 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02846 - - gmx:102664320 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02846 03 49788956 49790709 Cca03g02846 03 49788956 49790709 ECH